| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0860 |
|---|
| Symbol | |
|---|
| ID | 3747570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 1192034 |
|---|
| End bp | 1193554 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637773389 |
|---|
| Product | Fe-S type hydro-lyase tartrate/fumarate alpha and beta region |
|---|
| Protein accession | YP_379168 |
|---|
| Protein GI | 78188830 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0061897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAT TTAAAGCTTC AATGCTTGCG CTTATTACCG AAACTTCAGC GAATCTGCCA
AGCGACATTC GCCGTGCTCT TGCGGCGGCT ATTCAGCGTG AAGATGCGGC TTCGCAAGCT
GGGCTTGCCA TGTCAACCAT TTCGGTAAAT ATTGATATGG CAGTTGACAA TATTTCGCCC
GTCTGCCAAG ATACAGGAAT GCCAACCTTT TTTATTCACA TCCCAAAAGG GGTGGATATG
CTTCCATTGA AGCGTGATAT TGAGGAAGCT ATTGCAGAGG CATCAAAAAC AGGGAAACTT
CGTCCAAATG CGGTTGATGC AATCAGTGGT AAAAATTCGG GCAACAACCT CGGCGAGCAT
GTGCCCGTTA TTCATTTTGA GCCTTGGGAT AAGGATGAAA TTGAAGTAAA GCTCATTTTA
AAAGGTGGTG GATGTGAGAA TAAGAATATT CAATACTCAT TGCCGCAAGA AATTCCCGGA
CTTGGTACTG CTTCGCGCGA TTTGGAGGGA GTGCGCAAAT GCTTGCTCCA TGCAGTATAT
CAAGCACAAG GGCAGGGATG TAGCCCCGGC GTGATTGGCG TTGGCGTTGG TGGCGATCGT
ACCAGCGGTT TTGAGCTTGC TAAAAAGCAG CTTTTCCGTA TGCTCGACGA CCGTAATCCC
AACAGTGAGC TGGATGCGCT TGAGCAGGAG ATTATGGAAA AAGCCAATAA CATGAATATT
GGACCCATGG GTTTTGGTGG CAAAACAACG CTGCTGGGCT GCAAAATTGG TATGTCGCAC
CGTGTGCCAG CAAGCTTTTT TGTTTCAGTA GCCTATAACT GCTGGGCATA CCGTCGTCTT
GGCGTTCTCA TTGATCCTGC AACGGGAGCA ATTACCCATT GGCACTATCG TGAGGCGGAT
GAAATTAAGC GTATGGCACA AGGCGAGGGA ATGCCGCTTA CGGGACGTGA AGTTGTGTTG
CAAGCGCCTG TAACCGAAGA GCAAGTGCGC AGCTTAAAGG TTGGTGATGT GGTGCTGGTT
AATGGCACCA TGCACACAGG GCGCGACGCT TTTCACCACT ACATTATGCA CCACGATTTA
CCCGCTGGGC TTGATACAAA CGGAGGTATT TTGTTCCATT GCGGTCCCGT CATTATGAAA
AACGAGGATG GCAGTTACCG CGTAACCGCA GCAGGTCCAA CAACCTCCAT TCGCGAAGAG
CCATTCCAAG CCGATGTTAT TAAAAAGCTT GGTTTGCGCG TTGTGATTGG TAAAGGCGGT
ATGGGTCCAA AAACTTTGGC TGGCTTACAA GAGCATGGCG CAGTTTACTT GAACGCTATT
GGCGGCGCTG CTCAATATTA TGCACGTTGC ATTGAAAAAG TTACAGGCGT TGATTTTCTT
GAAGAGATGG GCGTTCCTGA AGCCATGTGG CATTTTGAAG CAAATTCATT CCCTGCCATT
GTAACAATGG ATGCACATGG CAATAGTTTG CATCAGCAAA TTGAAGAGGA GTCGTTTAAC
GCTCTTGCTT CTTTTAAATG A
|
|---|
| Protein sequence | MEQFKASMLA LITETSANLP SDIRRALAAA IQREDAASQA GLAMSTISVN IDMAVDNISP
VCQDTGMPTF FIHIPKGVDM LPLKRDIEEA IAEASKTGKL RPNAVDAISG KNSGNNLGEH
VPVIHFEPWD KDEIEVKLIL KGGGCENKNI QYSLPQEIPG LGTASRDLEG VRKCLLHAVY
QAQGQGCSPG VIGVGVGGDR TSGFELAKKQ LFRMLDDRNP NSELDALEQE IMEKANNMNI
GPMGFGGKTT LLGCKIGMSH RVPASFFVSV AYNCWAYRRL GVLIDPATGA ITHWHYREAD
EIKRMAQGEG MPLTGREVVL QAPVTEEQVR SLKVGDVVLV NGTMHTGRDA FHHYIMHHDL
PAGLDTNGGI LFHCGPVIMK NEDGSYRVTA AGPTTSIREE PFQADVIKKL GLRVVIGKGG
MGPKTLAGLQ EHGAVYLNAI GGAAQYYARC IEKVTGVDFL EEMGVPEAMW HFEANSFPAI
VTMDAHGNSL HQQIEEESFN ALASFK
|
|---|
| |