| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0816 |
|---|
| Symbol | |
|---|
| ID | 3746815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 1142602 |
|---|
| End bp | 1143255 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637773346 |
|---|
| Product | thiamine monophosphate synthase |
|---|
| Protein accession | YP_379125 |
|---|
| Protein GI | 78188787 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.380112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATC CAATACTTCC GCCACTCCGC CACATCCCCA CATCACCTTT TTTGTGCGCT
CTTACCGATG CAACCCTTCC ACCTCTTCCA TTTGTAAAAG CTGTGCTTGC GGGTGGCGCC
ACCATGATTC AGCTTCGCGT TAAAGAGGCG ACAACTCGTG AGCTGATTGC TTGGGGAGTG
GAAATTCGCA CACTTTGCCA TGCCGCAGGC GCTTGCTTTA TAGTAAATGA TCGGGTGGAT
GTTGCCTTAG CGTGTGGTGC CGATGGGGTG CATCTTGGGC AGCAGGATAT GCCGTGCAGC
CTTGCACGCA AGCTTTTTGG TAAGGATATG CTGATTGGCG TTTCGGCTTC AACGGTGGCT
GAGGCACTGC AAGCCGAACA AGATGGGGCT GATTATATTG GTTTTGGGCA TATCTATCCC
ACTAATTCAA AAGAGAAGCC ACATTCACCG GTTGGGCTTA GCACACTTCA GCAGGTTGCA
AAAGCTATCT CGCTGCCCAT TGTGGCTATT GGGGGAATTT CTGGGGAAAA TGCTTCGGCA
GTCATTGCGG CTGGTGCCTC AGGTATTGCG GTTATTGCGG CTTTGAGCAA AGTGGAAAAT
CCCACGGTAG CCGCCACAAA GCTCTGTGCC GCCATGCAAG GAGTTGCCTT ATGA
|
|---|
| Protein sequence | MINPILPPLR HIPTSPFLCA LTDATLPPLP FVKAVLAGGA TMIQLRVKEA TTRELIAWGV
EIRTLCHAAG ACFIVNDRVD VALACGADGV HLGQQDMPCS LARKLFGKDM LIGVSASTVA
EALQAEQDGA DYIGFGHIYP TNSKEKPHSP VGLSTLQQVA KAISLPIVAI GGISGENASA
VIAAGASGIA VIAALSKVEN PTVAATKLCA AMQGVAL
|
|---|
| |