Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_0390 |
Symbol | thyX |
ID | 3747558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | + |
Start bp | 453033 |
End bp | 453701 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637772918 |
Product | FAD-dependent thymidylate synthase |
Protein accession | YP_378706 |
Protein GI | 78188368 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1351] Predicted alternative thymidylate synthase |
TIGRFAM ID | [TIGR02170] thymidylate synthase, flavin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00258676 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTTC GCCTTATTGC TACTACCACT CCAGCCATTC AAATTGAAGG GCAAACACCC ACGCCTGAAG GGTTAATGGC TTACTGTGCA CGAGTTTCAA GCCCGAATCA AGAGTCGCTT GATTATGAAA AGCTGCTTGC TTACTGCATT CGTAACAAGC ATTGGAGCGT TTTTGAAATG GTTGATATGA CGGTTGAAAT AGTTACCTCA CGAGCAATTT CACCCCAAAT ATTAAGGCAC AAGAGCTTTC AATTTCAGGA ATTCAGTCAA AGATACGCCA AAGTGCAGGA GGTTGAGCGT TATGAGCCAC GCCGTCAAGA CAGCAAAAAT CGCCAAAATT CTATTGACGA TTTAGATGAA TCGGTAAAGG TGTGGTTTAT GGAGGCGCAA GAGGAGATTG CTAACAACGC GATGGAGTAC TACAACATGG CGCTTGAAAA AGGCATTGCA AAAGAGTGTG CTCGTGTGCT ACTGCCGCTT GCAACCCAAA CCCGTTTATA CATGAAAGGT TCAGTGCGGA GTTGGATTCA CTACTTGGAG GTTCGTACAA GCAGCAGCAC ACAAATGGAG CATCGTGAAA TAGCGCTCGC TATTCAACGC CTTTTTATGG AGCAATTTCC CATTACTGCT TCAGCGTTGG GGTGGAAGTC GGCAGCTCCG TGCCCGTAA
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Protein sequence | MNVRLIATTT PAIQIEGQTP TPEGLMAYCA RVSSPNQESL DYEKLLAYCI RNKHWSVFEM VDMTVEIVTS RAISPQILRH KSFQFQEFSQ RYAKVQEVER YEPRRQDSKN RQNSIDDLDE SVKVWFMEAQ EEIANNAMEY YNMALEKGIA KECARVLLPL ATQTRLYMKG SVRSWIHYLE VRTSSSTQME HREIALAIQR LFMEQFPITA SALGWKSAAP CP
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