Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_0354 |
Symbol | rplA |
ID | 3748037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | + |
Start bp | 401018 |
End bp | 401707 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637772882 |
Product | 50S ribosomal protein L1 |
Protein accession | YP_378670 |
Protein GI | 78188332 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0081] Ribosomal protein L1 |
TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000103528 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGGAA AAAAGTACAG AGAAGCTGCT ACTAAAATTG AGCGTTTTCG TGATTACGAG CTCGCTGAAG CAATTGAGAA AGTAAAAGAG GTTACTACTA CAAAGTTTGA TGCAACTGTT GATGTTGCTG TTAAACTTGG CGTGGATCCC CGTCATGCCG ATCAAGTAGT TCGTGGCACC GTTATGTTGC CACATGGTAC GGGTAAAACA GTATCCGTGC TTGTAATCTG CAAAGAGACC AAAGCCGAAG AAGCAAAAGA AGCTGGTGCT GATTTTGTTG GCTTTGAAGA GTACATCACC AAAATCCAAG AGGGTTGGAC AGGCGTTGAT GTTATTATTG CAACTCCCGA CGTTATGGGT CAGCTTGGTA AAGTTGCCAA AATTCTTGGT CCACGTGGCT TAATGCCAAA CCCAAAATCA GGCACAGTAA CAATGGATGT TGCTAAAGCC GTTAAAGAGG TGAAAGCTGG TAAAATTGAA TTCCGTGTTG ATAAAGCGGG TAACATTCAT GCACCAGTCG GCAAAGTTTC ATTTGATTCT GAGCATCTTA ACACCAATAT TGTTGCTTTT CTTAAGGAGG TTGTCCGTTT AAAGCCATCA GCCGCCAAAG GGCAATATGT ACAAGGTATT GCTTTGTCAA GCACGATGTC ACCAAGCGTG AAGGTTAAAA TGGATAAATT TATCTCCTAA
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Protein sequence | MAGKKYREAA TKIERFRDYE LAEAIEKVKE VTTTKFDATV DVAVKLGVDP RHADQVVRGT VMLPHGTGKT VSVLVICKET KAEEAKEAGA DFVGFEEYIT KIQEGWTGVD VIIATPDVMG QLGKVAKILG PRGLMPNPKS GTVTMDVAKA VKEVKAGKIE FRVDKAGNIH APVGKVSFDS EHLNTNIVAF LKEVVRLKPS AAKGQYVQGI ALSSTMSPSV KVKMDKFIS
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