Gene Cag_0354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCag_0354 
SymbolrplA 
ID3748037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium chlorochromatii CaD3 
KingdomBacteria 
Replicon accessionNC_007514 
Strand
Start bp401018 
End bp401707 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content42% 
IMG OID637772882 
Product50S ribosomal protein L1 
Protein accessionYP_378670 
Protein GI78188332 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0081] Ribosomal protein L1 
TIGRFAM ID[TIGR01169] ribosomal protein L1, bacterial/chloroplast 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000103528 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGGAA AAAAGTACAG AGAAGCTGCT ACTAAAATTG AGCGTTTTCG TGATTACGAG 
CTCGCTGAAG CAATTGAGAA AGTAAAAGAG GTTACTACTA CAAAGTTTGA TGCAACTGTT
GATGTTGCTG TTAAACTTGG CGTGGATCCC CGTCATGCCG ATCAAGTAGT TCGTGGCACC
GTTATGTTGC CACATGGTAC GGGTAAAACA GTATCCGTGC TTGTAATCTG CAAAGAGACC
AAAGCCGAAG AAGCAAAAGA AGCTGGTGCT GATTTTGTTG GCTTTGAAGA GTACATCACC
AAAATCCAAG AGGGTTGGAC AGGCGTTGAT GTTATTATTG CAACTCCCGA CGTTATGGGT
CAGCTTGGTA AAGTTGCCAA AATTCTTGGT CCACGTGGCT TAATGCCAAA CCCAAAATCA
GGCACAGTAA CAATGGATGT TGCTAAAGCC GTTAAAGAGG TGAAAGCTGG TAAAATTGAA
TTCCGTGTTG ATAAAGCGGG TAACATTCAT GCACCAGTCG GCAAAGTTTC ATTTGATTCT
GAGCATCTTA ACACCAATAT TGTTGCTTTT CTTAAGGAGG TTGTCCGTTT AAAGCCATCA
GCCGCCAAAG GGCAATATGT ACAAGGTATT GCTTTGTCAA GCACGATGTC ACCAAGCGTG
AAGGTTAAAA TGGATAAATT TATCTCCTAA
 
Protein sequence
MAGKKYREAA TKIERFRDYE LAEAIEKVKE VTTTKFDATV DVAVKLGVDP RHADQVVRGT 
VMLPHGTGKT VSVLVICKET KAEEAKEAGA DFVGFEEYIT KIQEGWTGVD VIIATPDVMG
QLGKVAKILG PRGLMPNPKS GTVTMDVAKA VKEVKAGKIE FRVDKAGNIH APVGKVSFDS
EHLNTNIVAF LKEVVRLKPS AAKGQYVQGI ALSSTMSPSV KVKMDKFIS