| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0342 |
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| Symbol | dapF |
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| ID | 3748024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium chlorochromatii CaD3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007514 |
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| Strand | - |
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| Start bp | 386816 |
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| End bp | 387628 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637772869 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_378658 |
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| Protein GI | 78188320 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00240422 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATATAC CGTTCAAAAA ACTATCAGGT GCAGGTAACG ACTTTATTGT GATTGATAAC
CGTCATAATT CTATAGAGTT CTCCACTGAA ACAATTAAAG CTCTCTGTAC TCGACGCACT
GGTATTGGTG CTGATGGATT GATTTTAATT GAAGCCTCGC TATCGGCTGA CTTTACCATG
AAGTATTACA ATTCCGACGG ACTGCTTGGC TCCATGTGTG GGAATGGTGG ACGTTGCGCT
GCTTATTTTG CTTATAACAG CGGGGTGCCA ACCCAAAAAT CAAATGAGTA CCTCTTTGAA
GCCAACGGTA ATTATTACCA CGCATGGATA GTTGACAAAG AGCAAGTAAA ATTACAAATG
AACCCACCAC ATGATTTTAA AGAGAATTTA CAAGTAGAGG GATTGTTGTG TTATTTTTTA
AATACAGGCT CTCCCCATGT TGTTACCTAT GTTGATGATG TAAATATAAT TAATGTTTAT
GAGAAAGGAG ATGCTATACG CCACCGTACC GATATATTTA ACGGTGGCAC AAATGTGAAT
TTTGTACAAC AAACCTCAGC TAACGAGCTC ATTATTCGCA CCTTTGAACG AGGAGTAGAG
GATGAAACAC TTGCTTGCGG TACAGGAGCT GTTGCCTCTG CATTAATCTC GCACATGCTC
GGCAAAACCA ACAGCACCTC TCTTAATGTT ACCGTAAGAA GCGGTGATAC CCTCCAAATA
TCATTTACCA GCGCTATGGA AAATATTTAT CTTAGTGGAC CCGCAAAAAT TATTTTCAGC
GGGACATTCG AAAAAACAAG CAATTACGCT TAA
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| Protein sequence | MNIPFKKLSG AGNDFIVIDN RHNSIEFSTE TIKALCTRRT GIGADGLILI EASLSADFTM
KYYNSDGLLG SMCGNGGRCA AYFAYNSGVP TQKSNEYLFE ANGNYYHAWI VDKEQVKLQM
NPPHDFKENL QVEGLLCYFL NTGSPHVVTY VDDVNIINVY EKGDAIRHRT DIFNGGTNVN
FVQQTSANEL IIRTFERGVE DETLACGTGA VASALISHML GKTNSTSLNV TVRSGDTLQI
SFTSAMENIY LSGPAKIIFS GTFEKTSNYA
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