| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_2234 |
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| Symbol | |
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| ID | 3743486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 2142471 |
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| End bp | 2143604 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637772433 |
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| Product | type II alternative RNA polymerase sigma factor |
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| Protein accession | YP_378235 |
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| Protein GI | 78185801 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCGCGCT TACCCCGACG GACTGGGGAA ACCCGTAGTC GCCGCTCCAG CGGGACGGCG
GATCTGTTGC GGCTGTATCT GCAAGACATT GGCCGCGTTG ACCTGCTCAC CAGCGAGGAG
GAAGTCACGC TGGCTCGGCT TGTACAGCGA CGCGAGACGC TTTTAAAACA GCAGCGCGAG
CTGTCCGACA CCAATCAGGC CATTGGTGAA CTGCATCGCT TGGAGGAGCT CCAACGCCGC
GAAGCCAATC ACCACAGTCA TTGGCCCACC AAACAAGAGT GGGCCCGCGC CGCAGCATTA
ACCCTCCAGG AGCTGCAAAA CCGCATCGAT GCGGGCTACG AGGCTTGGGC TGAAAAAGCC
GCCATTGACG CCAAAGAACT CAAGCTGAGC CTGCGCAACG GACGACGGGC GAAGGACCAC
ATGATCCAGG CCAACCTCAG GCTTGTGGTG GCTGTGGCCA AGAAGTACCA GCAGCGGGGG
ATGGAAATCC TTGACCTGGT GCAGGAAGGA ACCCTGGGTC TCGAACGCGC TGTCGAAAAA
TTCGATCCCA CCCGGGGCTT CCGCTTCAGC ACCTATGCCT ACTGGTGGAT CCGCCAAGGC
ATGACTCGGG CGATTGCCAC CCAAAGCCGC ACCATTCGTC TCCCTGTGCA TGTCACAGAG
AAGCTCAACC GGATCAAACG GGTTCAGCAG GAGATCGCAA GCAACGAAGG GCGAATCGCC
TCCATTGCCG ATTTAGCCCG CGAACTGGGC ATCAGTGAAG ACACGGTGCG ACAAACCCTG
GAGCGTGTCC CCCGCTCGGT GTCACTGGAT AGCCGCGTTG GCAAAGATCA AGACACGCAG
CTCGGGGATC TGATCGAAGA CGGCAAGGCC ACACCTGAAG AAACCTTGAC CCACGACGAA
CTCCATAACG ACCTTGAAGG TCTTCTCGAT GAACTCACCC CCCGAGAAGC CTCGGTGCTC
CGGCGACGGT TTGGTCTCGA GGACGACACT CCACAAACCC TGGCGCAAAT CGGAGAGGAA
CTGAAGCTGT CGCGGGAACG GGTGCGTCAG ATCGAAACCC GTGCCTTACT CAAGCTGCGC
CAACCCCAAA AACGCAGCAA AATTCGGGAC TACATCCAAG GTTTGGATTC CTAA
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| Protein sequence | MPRLPRRTGE TRSRRSSGTA DLLRLYLQDI GRVDLLTSEE EVTLARLVQR RETLLKQQRE
LSDTNQAIGE LHRLEELQRR EANHHSHWPT KQEWARAAAL TLQELQNRID AGYEAWAEKA
AIDAKELKLS LRNGRRAKDH MIQANLRLVV AVAKKYQQRG MEILDLVQEG TLGLERAVEK
FDPTRGFRFS TYAYWWIRQG MTRAIATQSR TIRLPVHVTE KLNRIKRVQQ EIASNEGRIA
SIADLARELG ISEDTVRQTL ERVPRSVSLD SRVGKDQDTQ LGDLIEDGKA TPEETLTHDE
LHNDLEGLLD ELTPREASVL RRRFGLEDDT PQTLAQIGEE LKLSRERVRQ IETRALLKLR
QPQKRSKIRD YIQGLDS
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