Gene Syncc9902_2205 details

Gene Information

• Locus tag: Syncc9902_2205
• Symbol: ligA
• ID: 3742990
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: +
• Start bp: 2114928
• End bp: 2116970
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637772404
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_378206
• Protein GI: 78185772
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGATC AGAGCGAACG GGCTACGGAA CTGCGCAACC TGCTGAACAC GGCAGCCCAT 
GCGTATTACG TGCTCGATAC GCCAACCATG GAAGACGCGG TCTACGACCG CCTGTACCAA 
GAGCTGCTGG AGCTCGAGCA AAACACCCCG AGCCTAAAAA CCGCCGACAG TCCCACCCAA 
AGGGTGGGAG GCGCCCCCGC CGAGGGCTTC ACGAGCGTCG AGCACCGCAT CGGACTGCTC 
AGTCTCGACA ACGCGTTCAA TCGCGACGAT CTCAGCGCCT GGAATGAACG GCTACTGCGC 
GCGATCGATC GCCCCCTCGG CAGCCCACTG GACTTAGTGA GTGAGCTGAA AATCGATGGC 
AACGCGCTTG CCCTCAGTTA CCGCAACGGG GTTCTCGAAC GGGCAGCCAC AAGGGGAGAC 
GGCCAACGCG GCGAGGAGAT CACCGCCAAC GTGCGCACCA TCAGCGCAAT TCCGCTCCGC 
TTGCGGCTCG ACAATCCACC GGAGTGGGTG GAGATTCGCG GTGAAGCCTT TATCCCAGAC 
AACACGTTCG CCGAGATCAA TGCGGAACGG GAGTCGCGCG GTGAAGCTCT GTTTGCCAAC 
CCCCGCAACG CCTGTGCCGG AACACTGCGT CAACTCGATC CCAAAGTTGT GGCAGCGCGA 
CGCTTGGACT TTTTCGCCTA CACCCTGCAC CTCCCAACCC AAGAGCAACC AGCCAGCCAA 
TGGGATGCCC TGACATGGCT TGAGAACGCA GGATTTCGCG TGAATCCCAA CCGAGCCCTC 
TGCGCCGATC TTGCGGACAT CAACCGCTTC TCCGACCACT GGGAGCAGGC GCGGCATGAC 
CTTCCCTATG CCACCGATGG CGTGGTGGTG AAGCTGAACA ACTTGGTGCT CCAAGACGAA 
GCTGGCTTCA CCCAAAAATC ACCACGCTGG GCGATCGCCC TGAAATTTCC AGCGGAAGAA 
GCGCCAAGTC GTCTGCTTCG AGTTGTGGTG CAAATTGGCC GCACGGGCGT GATCACCCCC 
GTCGCGGAAT TCGAACCCGT CGCTTTGGCT GGCACCAGCG TGAGCCGCGC CACTCTCCAC 
AACGCCGATC GGATCGCTGA ACTGGATCTT CATCTGGGCG ACACCATCGT GGTGCGCAAA 
GCCGGTGAAA TTATTCCCGA AGTGGTGCGG GTGCTGCCTG AACTCCGACC CAGCAGTGCC 
ACCCCGGTGC AGCTGCCGGA ACACTGCCCC GAATGTGGAT CAAACCTGGT GCGGGAAGGC 
GATGAAGTCG CCACCCGATG TGTGAACAGC AGCTGTCCGG CAATCCTGCG GGGCGGTCTA 
CGGCACTGGG TGAGCAAGGG CGCCCTGGAT GTGGACGGCC TCGGCAGCAA GCTGATCGAA 
CAGCTCGTCG ACCAAGGCTT GGTGCGTTCG ATTGCGGATC TGTATCGACT CGATGCAGCA 
CTCCTGGGCA GCCTCGATCG CATGGGCGAA CGCAGCGCCA ACAATTTGAT TGAAGCCCTG 
AAGCTGTCCC GACAACGATC GTGGGCCCGG CAGCTGTACG GCTTAGGCAT CCATCACATC 
GGCGAGGTGA GCGCAAAAGC GATCACCGCA GAATTTTCAG ATTCCAACAG CTTGATGGAG 
GCCGCCTGCA CCGCCCCCGA ACGCATCACT GCGATTTATG GGATCGGAAC AGAACTGGCC 
CAAAGCCTGC AGCAATGGTT TTCCAACCCA GCGAACCAAC ATTTGCTCGA CGATCTCCGC 
AGCCAAGGGT TTCGCTTCGC GCTGGATGAC AACGACCCAG GACGTCTTGG CGCTGCCGCA 
TCCGAACAAC ACCTCAAAGG CCTCACCTTC GTTCTTACGG GCACCTTGCC GACCCTTTCC 
CGTTCCGAAG CCAAGGAACG CATTGAAACC TGTGGAGGAA AAGTATCTGG CTCCGTGAGC 
AAAAAAACCG ATTACCTCGT TGCCGGCGAA GAGGCCGGGA GCAAACTCAC CAAAGCCACA 
ACACTGGGCA TCAAAATCCT CGACGAAGAT CGCCTTCAGG CGATGCTGAA AGATTCTCCA 
TAA 

 

Protein sequence

MPDQSERATE LRNLLNTAAH AYYVLDTPTM EDAVYDRLYQ ELLELEQNTP SLKTADSPTQ 
RVGGAPAEGF TSVEHRIGLL SLDNAFNRDD LSAWNERLLR AIDRPLGSPL DLVSELKIDG 
NALALSYRNG VLERAATRGD GQRGEEITAN VRTISAIPLR LRLDNPPEWV EIRGEAFIPD 
NTFAEINAER ESRGEALFAN PRNACAGTLR QLDPKVVAAR RLDFFAYTLH LPTQEQPASQ 
WDALTWLENA GFRVNPNRAL CADLADINRF SDHWEQARHD LPYATDGVVV KLNNLVLQDE 
AGFTQKSPRW AIALKFPAEE APSRLLRVVV QIGRTGVITP VAEFEPVALA GTSVSRATLH 
NADRIAELDL HLGDTIVVRK AGEIIPEVVR VLPELRPSSA TPVQLPEHCP ECGSNLVREG 
DEVATRCVNS SCPAILRGGL RHWVSKGALD VDGLGSKLIE QLVDQGLVRS IADLYRLDAA 
LLGSLDRMGE RSANNLIEAL KLSRQRSWAR QLYGLGIHHI GEVSAKAITA EFSDSNSLME 
AACTAPERIT AIYGIGTELA QSLQQWFSNP ANQHLLDDLR SQGFRFALDD NDPGRLGAAA 
SEQHLKGLTF VLTGTLPTLS RSEAKERIET CGGKVSGSVS KKTDYLVAGE EAGSKLTKAT 
TLGIKILDED RLQAMLKDSP