| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1993 |
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| Symbol | |
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| ID | 3743715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 1891820 |
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| End bp | 1894951 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637772189 |
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| Product | RND family multidrug efflux transporter |
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| Protein accession | YP_377994 |
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| Protein GI | 78185560 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00306956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTCGA TCTCTCAGCC CTTCCTTCGG CGCCCCGTTT TCACGGTGGT GTGCAGCCTG
CTCATTCTTT TGGCTGGGCT GACCTCCATG GTGGGACTTG GACTCGAGGA TCTTCCTCAA
CTTGCGCCGA CAAGGGTGAG CGTGAGTGCA AGCTTCCCAG CGGCCTCCCC AGACGTCGTT
GAGCAAAGCG TTACGGCTGT CTTGGAGCAG CAGCTCAACG GTCTTGAAGG GGTTGAAAGC
ATCAGCTCCA CCAGCCGTCA AGGCGGAGCA AGTATCAGCC TGCGGTTCAG CGCGGGGGAT
CCCGAACTCA ATGCGATCAA GGTTCAAAAC GAAGTAAACC TGGCGACACG CCGCTTACCA
ACAGCGGTTG GTCGGCAAGG CCTACAGGTT CGACGCTCAT CGAACGACCT ACTGATGATC
CTCGGATTTA GTCATCCGAC TGATCAATAC GTACCAACAT TCCTCACGGG ATGGCTTGAT
CAATCGCTGA GAGAATCTCT CCTCACCACG CCAGGGGTAG GGGATGTCGT TGTGTTTGGT
GGGAGTGAGC TGTCCTTTCG GATTTGGTTA GACCCCCAGC GATTGGAGCA AGCGAAGCTC
ACCGTCACGG ACGTGACTCA GGCACTCGCA GAACAAAACG TCCTCGCAGC GATTGGAAGC
ATTGGTGCCT CACCCGCACC AACTGGACAA CTCATCAGCC TGCCCGTTGA AGCAGAAGGA
CGTCTTCGCA GCCAAGACGA CTTTGAGAAT CTCGTCCTAC GTCGATTCGA CAACGGAGGA
CTACTCCGAC TCAAAGATGT CGGCCGGGTG GTGCTGGGAC AGAAAAGCTA TGGCCGCACC
GCCACGAACC TCCAGGGGGA ACGTTCAGTT GCCGTCGGTC TTTATCAGCG GGACGGAGCC
AACGCTCTGC AGGTGAGTCG ATCGATCAAG GATCAACTCC AACAATTGGA ATCGAACTTT
CCACCGGGCG TTGAACTGTC GCTGATCGTC GACGTGGCTG ACACGGTTCA AGACAACCTC
GACCGCACGC TCGGCACCTT GCGCGACGCC GTGATTCTGG TGTTGCTCGT CCTGGTGTTG
TTCCTTGGAC GTTGGCGGTT AGCCATGATT CCAGGGATCG CCGTTCCGGT TGCTTTGGTC
GGCAGCCTGA TTGTTGTCCG ACTGAGCGGA TCGGAGCTGA ATAGTTTGAT CCTGTTCGGC
CTCGTGCTGG CCACTGGCAT CGTGGTCGAC GACGCGATTG TCGTCACGGA AGACATCGCA
AGCCGCATCG AACGTGGTGA AGCCCCGCAG CAAGCCGCAG AAAATGCCAT GGCCGAGCTT
GCCGGCGCAG TGGTCGCAAC GTCACTCGTT CTGGCAGCCG TTTTTATTCC AGTGCTTCTC
ATTCCAGGAT CCGTTGGCCG GTTGTACCAA CCAATCGCCT TAGCCATTAG CGGGGCCATT
TTGTTCTCCA CCGTCAACGC ACTGTCATTC ACACCAATGG CAACAGCCAG AGTTCTGGGG
ACATGGAGCG GAGGACTCCC AAACCCGATT CAACGCTTTA GCGCGGGTTT ACAACGCGGA
ATGACGCGCC TGCAAACGCT GTATGAACGA CTTTTAAGGC AGTGGTTGAA GCGCAGCCAA
CTTCTCGCTG TGCTCCTCAC GATCGGCTTG ATCGGCACCT CTGCAGGTTT AGCCACGATT
CCGACGTCGT TCATTCCCAA TGAAGATCAA GGTCAACTCC GTGGCTACTT CACGCTTCCC
GAGGGAGCGA GCCTGGAACG CACGGCGAAG GTGATGGACC AAATCCGAAC CATCGTTGCC
AAAGATCCCC TCATCAGAAC CGGCAACTTT TACGCAGGAA ATTCATTTGG AGAAAGCGGC
GAAGACCGTG GATCCTTCTA TCTGCGTTTA GCCCCCATCC AGGAGCGAAA CCAGCCAAAC
CAAAGCAGTG CAGCGATTCA ACGTCGCCTT TCGCGAGCGA TCCGAAGCCA AATCCCGTCC
GCACGTGTGA TCGTGACCAC CCCTCCCACC GTTCGCGGGT TTAACAGCGA ATCGGGCTTG
GTGGTGGAGT TGTTAGATCG CAGCGGTGGA CAACTCAGTC TTCCGGAATT TGAAGCGGTC
GCTCAACGAT TCATCGCGAC AGCGCAAGCC GGTGGTCAAT TTGAAAGGAT TGGCACGCGA
TTTGATGCGT CATCGCCACG CTGGCGACTT GAACTTGACC GCGACCAAAC CGCAGCCCTT
GATCTGGACT ATGGGGCCAC ATTGCGCGAA ATCGGCACCG CCATCGGGGG CCGCTACGTG
AACGACACCT ATGAAGGAGG GCGTGTTCGA AGTATTTACG TTCAATTAGA AGGGGACGAA
CGCAATAGCC CAGCAGATCT CACAAACTTG ATGGTGCGGA ATCGCCAAGG AGAGATGATT
TCGGTTGCAT CCATTGCTCA ATTAATCCGT GAGGAAGGTG CCAACAGCAT TAGCCATTAC
GGCCTGAATC GTGCCATTCG AATTACTGCT GTACCGAAAC GAACAATCAG CAGTGGCCAA
GCCATTCAAA TGCTGGAACG CACGGGCGAT CAGATCGGAG GAAACAATAT TGGCCTGGCG
TTTACTGGCT TGGCAAAAGA GGAACAGAAA GCACGAAGTG TCACCTGGCT GCTATTCAGT
TTAGGAGTGT TGGTTGTGTA TCTACTACTG GCAGGACTTT ACGAGAGCTT CATTGATCCA
TTCATAATTT TGCTCACAGT ACCGATAGCA CTCATGGGGG CACTGATTGG ATTAAAGCTC
AGGGGGTTGC CACTTGATGT CTACGGGCAA ATGGGCTTCT TGGTTCTGAT TAGCTTGGCT
GCAAAAAATG GTATTTTGAT CGTCGAATTT GCCAATCAAA GACTTTCGCA GGGGCTCAAA
TTAGGCGACG CAATCCTGAG TGCAGCGGTC AATAGAATGC GCCCAATTGT ACTGACAGCC
GTTACATCAC TTGCTGGATT CTTACCACTA TTATTTGCCA GTGGCACGGG CTCAGCAAGC
AGAATCAGCA TTGGAACAGT GGTTTTTAGC GGTTTACTTA CATCGACCCT TCTATCTCTT
TTTGCGATAC CCGCGCTATA TCTGCATCTA AAAAAAAGAA CTGGAACGCC ATCTTCATCT
CCTCAAGACT GA
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| Protein sequence | MRSISQPFLR RPVFTVVCSL LILLAGLTSM VGLGLEDLPQ LAPTRVSVSA SFPAASPDVV
EQSVTAVLEQ QLNGLEGVES ISSTSRQGGA SISLRFSAGD PELNAIKVQN EVNLATRRLP
TAVGRQGLQV RRSSNDLLMI LGFSHPTDQY VPTFLTGWLD QSLRESLLTT PGVGDVVVFG
GSELSFRIWL DPQRLEQAKL TVTDVTQALA EQNVLAAIGS IGASPAPTGQ LISLPVEAEG
RLRSQDDFEN LVLRRFDNGG LLRLKDVGRV VLGQKSYGRT ATNLQGERSV AVGLYQRDGA
NALQVSRSIK DQLQQLESNF PPGVELSLIV DVADTVQDNL DRTLGTLRDA VILVLLVLVL
FLGRWRLAMI PGIAVPVALV GSLIVVRLSG SELNSLILFG LVLATGIVVD DAIVVTEDIA
SRIERGEAPQ QAAENAMAEL AGAVVATSLV LAAVFIPVLL IPGSVGRLYQ PIALAISGAI
LFSTVNALSF TPMATARVLG TWSGGLPNPI QRFSAGLQRG MTRLQTLYER LLRQWLKRSQ
LLAVLLTIGL IGTSAGLATI PTSFIPNEDQ GQLRGYFTLP EGASLERTAK VMDQIRTIVA
KDPLIRTGNF YAGNSFGESG EDRGSFYLRL APIQERNQPN QSSAAIQRRL SRAIRSQIPS
ARVIVTTPPT VRGFNSESGL VVELLDRSGG QLSLPEFEAV AQRFIATAQA GGQFERIGTR
FDASSPRWRL ELDRDQTAAL DLDYGATLRE IGTAIGGRYV NDTYEGGRVR SIYVQLEGDE
RNSPADLTNL MVRNRQGEMI SVASIAQLIR EEGANSISHY GLNRAIRITA VPKRTISSGQ
AIQMLERTGD QIGGNNIGLA FTGLAKEEQK ARSVTWLLFS LGVLVVYLLL AGLYESFIDP
FIILLTVPIA LMGALIGLKL RGLPLDVYGQ MGFLVLISLA AKNGILIVEF ANQRLSQGLK
LGDAILSAAV NRMRPIVLTA VTSLAGFLPL LFASGTGSAS RISIGTVVFS GLLTSTLLSL
FAIPALYLHL KKRTGTPSSS PQD
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