| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1956 |
|---|
| Symbol | rplD |
|---|
| ID | 3742232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 1870186 |
|---|
| End bp | 1870821 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637772152 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_377957 |
|---|
| Protein GI | 78185523 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGTT GTGTAGTCCG CGATTGGCAG GGGAAGGAAG CCGGCAAGGC AACCTTGGAC
CTGAAAGTGG CGAAAGAAGC CTCAGCAGTT GACTTGATGC ACCGTGCAGT TCTGCGACAG
CAGGCTCACA TGCGCCAAGG CACTGCGAGC ACGCTCACCC GGTCAGAAGT CCGTGGTGGT
GGTCGTAAGC CTTACAAGCA GAAAGGAACA GGCCGTGCAA GGCAAGGTTC TGTTCGAACC
CCTCTGCGTC CGGGCGGCGG CATCATTTTT GGACCCAAGC CTCGGAGTTA CAACCTTGCG
ATGAATCGCA AGGAACGTCG TTCAGCCCTG CGCACAGCGC TCATGGCTCG TATCGACGAC
ATCACCGTTG TGAAGGACTT CGGGACATCC CTTGAAGCTC CAAAAACGCG TGAAATCACA
GAAGCCCTCG GACGCCTCGG CATCGCCGCA GACACCAAGG TGTTGATCGT TTTAACGAAC
CCATCCGAAA TGGTTCGTCG CTCCGTCCGC AACCTGGACA AGGTCAAGCT GATTTCAGCG
AATCACCTCA ACGTCTTCGA CCTTCTCCAC GCCAATTCTT TGGTCGTGGG AGAGGACGCT
CTCACAACCA TCCAGGAGGT TTACGGAGAT GACTGA
|
|---|
| Protein sequence | MASCVVRDWQ GKEAGKATLD LKVAKEASAV DLMHRAVLRQ QAHMRQGTAS TLTRSEVRGG
GRKPYKQKGT GRARQGSVRT PLRPGGGIIF GPKPRSYNLA MNRKERRSAL RTALMARIDD
ITVVKDFGTS LEAPKTREIT EALGRLGIAA DTKVLIVLTN PSEMVRRSVR NLDKVKLISA
NHLNVFDLLH ANSLVVGEDA LTTIQEVYGD D
|
|---|
| |