Gene Syncc9902_1483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_1483 
Symbol 
ID3742363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand
Start bp1434641 
End bp1436530 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content53% 
IMG OID637771668 
Productpeptidase M41, FtsH 
Protein accessionYP_377485 
Protein GI78185050 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.45624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAGGCGT GGGCTATGCC GATCCGTCAG GACGACAACC AACCGAACCG TCGTTTCGGA 
ATCATCAACC TGGTGTTAAT CGGCTTTGGA GTGTTGCTGC TAGTGAGCAG TTTCATCCCA
AGCAACGGTA TGCAGCAGGT GCCGAGGGTT CCTTATTCGT TGTTCATCGA CCAAGTGAAT
GATGGCGCCG TAAAACGGGC GTTCATCACG CAAGATCAAA TTCGCTACGA GTTGTCGGCC
CCGGAGGAGG GAACACCTCC TGTGTTGGCC ACAACGCCGA TTTTCGATAT GGATCTCCCC
CAACGCCTTG AGGCAAAGGG AGTTGAGTTC GCTGCAGCGC CCCCGAAAAA ACCAAATATT
TTCACCACGA TTTTGAGTTG GGTGGTCCCA CCACTGATTT TTATCTTGGT TCTGCAATTC
TTTGCGCGTC GCTCGATGGG CGGTGGTGCT CAGGGAGCCC TCAGTTTCAC CAAGAGCAAA
GCAAAGGTTT ACGTCCCGGA TGAAGAGTCA CGCGTCACCT TTGCTGATGT GGCTGGGGTG
GATGAAGCAA AAGACGAACT TACTGAAATC GTTGATTTCC TCAAAACTCC TGAGCGCTAT
GCAGAAATTG GAGCCCGTAT TCCCAAGGGT GTTTTGTTAG TTGGCCCTCC TGGTACTGGC
AAAACATTGC TCTCCAAGGC TGTTGCTGGT GAAGCAGAAG TTCCCTTCTT TATTATTTCC
GGCTCAGAAT TTGTAGAACT CTTCGTTGGT GCGGGTGCCG CTCGCGTTCG TGATTTGTTC
GAAGAGGCCA AGAAAAAAGC CCCTTGCATC ATCTTTATCG ACGAACTTGA TGCCATCGGT
AAGAGTCGTT CTGGCTCGAT GGGAGTTGTC GGTGGAAACG ACGAGCGCGA ACAAACGCTC
AACCAATTGC TCACGGAGAT GGATGGTTTC GCGGCCCAGG ACAAACCCGT CATCGTTCTT
GCGGCGACCA ACCAACCCGA GGTTCTCGAT GCGGCTCTGT TGCGTCCCGG TCGCTTCGAT
CGTCAAGTCC TAGTCGACCG TCCAGATCTT TCCGGTCGTA AAACAATTTT GGAGATCTAC
GCCAAGAAAG TGAAATTGGC TGAAGGAGTT GACCTCGACA GCGTGGCGCA AGCCACCAGT
GGATTTGCTG GTGCTGATCT AGCCAACCTT GTGAATGAGG CCGCCCTGCT AGCAGCTCGA
GTAAAACGCA CTCGAGTTGA GCAGCAGGAT TTAGGTGAAG CCATCGAGCG TGTTGTCGCT
GGCTTGGAGA AGAAGAGTCG TGTGCTTCAG GATGATGAGA AAAAAGTCGT GGCTTATCAC
GAAGTTGGCC ACGCCATCGT TGGTCACCTG ATGCCGGGTG GCAGCAAGGT TGCCAAGATT
TCAATCGTTC CTCGGGGCAT GAGTGCCTTG GGTTACACCC TTCAACTCCC CACAGAAGAA
CGGTTCCTCA ATTCCAAGGA AGATCTTCAG GGCCAAATCG CCACGCTGTT GGGTGGCCGC
TCGGCAGAGG AGATTGTTTT CGGAAAAATC ACCACTGGTG CGGCGAATGA TCTTCAGCGG
GCCACAGATC TCGCGGAGCA AATGGTTGGG ACCTATGGGA TGAGCGACAC CCTTGGACCG
TTGGCCTACG ACAAACAGGG GGGAGGACGT TTCCTTGGCG GCAATAACAA TCCCCGCCGA
TCTGTGAGTG ATGCCACAGC CCAAGCGATC GACCATGAAG TGCGGGGTCT AGTGGATAAA
GCCCACGACG ATGCCCTGTC GATCCTGCGT CAAAACATGG GACTTCTTGA AACCATTGCT
CAGAAGATTC TCGAGAAAGA AGTGATTGAG GGCGACGATC TGAAACAGAT GTTGGAGGCG
AGTGTTCTTC CGGAAGGCGT TAGCGCTTGA
 
Protein sequence
MQAWAMPIRQ DDNQPNRRFG IINLVLIGFG VLLLVSSFIP SNGMQQVPRV PYSLFIDQVN 
DGAVKRAFIT QDQIRYELSA PEEGTPPVLA TTPIFDMDLP QRLEAKGVEF AAAPPKKPNI
FTTILSWVVP PLIFILVLQF FARRSMGGGA QGALSFTKSK AKVYVPDEES RVTFADVAGV
DEAKDELTEI VDFLKTPERY AEIGARIPKG VLLVGPPGTG KTLLSKAVAG EAEVPFFIIS
GSEFVELFVG AGAARVRDLF EEAKKKAPCI IFIDELDAIG KSRSGSMGVV GGNDEREQTL
NQLLTEMDGF AAQDKPVIVL AATNQPEVLD AALLRPGRFD RQVLVDRPDL SGRKTILEIY
AKKVKLAEGV DLDSVAQATS GFAGADLANL VNEAALLAAR VKRTRVEQQD LGEAIERVVA
GLEKKSRVLQ DDEKKVVAYH EVGHAIVGHL MPGGSKVAKI SIVPRGMSAL GYTLQLPTEE
RFLNSKEDLQ GQIATLLGGR SAEEIVFGKI TTGAANDLQR ATDLAEQMVG TYGMSDTLGP
LAYDKQGGGR FLGGNNNPRR SVSDATAQAI DHEVRGLVDK AHDDALSILR QNMGLLETIA
QKILEKEVIE GDDLKQMLEA SVLPEGVSA