| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1069 |
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| Symbol | |
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| ID | 3742453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 1030529 |
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| End bp | 1032460 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637771245 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_377077 |
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| Protein GI | 78184642 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCTCG GAGATCTCAA GCATCCGAAC GAATTGCACG GCCTCAGTCT TGCTGAGCTC
GAAGATGTCG CTCGTCAGAT TAGGGAACGC CATCTCGACG TGGTTTCAAC GAGTGGTGGA
CACCTTGGAC CGGGGCTTGG TGTCGTTGAA CTCACCATTG CTCTGTATCA AACCCTCGAT
CTCGATCGGG ACAAAGTGTG TTGGGACGTG GGGCACCAGG CCTATCCCCA CAAGTTGCTC
ACTGGTCGCT TCAATTCCTT TGACTCCCTC CGGCAGCAAC GCGGTGTAGC TGGTTATTTG
AAGCGTTCTG AGAGCCGTTT TGATCACTTC GGTGCAGGCC ATGCCAGCAC GTCGATTTCT
GCAGCACTGG GGATGGCGTT GGGCCGTGAT AACCGCGGTG AAAATTTCAA ATGTGTTGCG
GTTATTGGGG ATGGTGCCCT GACGGGGGGC ATGGCCCTTG AAGCGATTAA CCACGCCGGC
CACCTTCCAA ATACGCCCCT CTTGGTGGTG TTGAACGACA ACGACATGTC GATCTCCCCG
CCGGTGGGTG CTCTGTCGAG CGTTCTCAAC CGGGCAAGAC TCAGTCCTCC GATGCAATTC
CTTTCCGGAA GTGTCGAGGA GAGTGTGCGT CACCTGCCTT TCATGGGTGG AGAGCTTCCT
GCCGAGCTCA ACCGCTTGAA GGGAAGCATG CGCCGCCTAG CGGTCCCAAA AGTTGGTGCT
GTTTTTGAGG AGCTCGGCTT TACCTACATG GGGCCGATCG ATGGACACGA CATCGGCGAG
ATGACTCGCA CCTTCCAAGC GGCCCATCGA GATGGTGGAC CTGTTTTGGT TCATGTTGTT
ACGAAGAAAG GCAAGGGTTA TCCCTATGCC GAGGCTGATC AAGTCGGCTA CCACGCCCAG
TCGGCCTTCG ACTTGAGCAC CGGCAAGGCC ATTCCATCAT CCAAGCCCAA GCCTCCTAGC
TACAGCAAGG TGTTTGGCCA AACCTTGATC AAGCTCTGTG AGCAAAACAG TCGCGTTGTT
GGGATCACCG CAGCGATGGC AACTGGCACC GGTCTCGATC TTCTTCAAAA GGCTGTTCCT
AATCAATACG TTGACGTTGG AATTGCTGAG CAGCATGCGG TCACGCTGGC TGCTGGTATG
GCCTGCGAAG GTTTACGCCC TGTTGTGGCG ATTTACAGCA CCTTCCTCCA GCGGGCTTAC
GACCAGCTGA TTCATGACGT TGGCATTCAA AATCTGCCGG TGATGTTCGT TCTCGATCGG
GCTGGCATCG TGGGCGCTGA TGGTCCAACG CATCAGGGTC AGTACGACAT CAGCTATTTG
CGGGCTGTTC CCAATTTCAC CGTGATGGCT CCGAAGGATG AGGCGGAGTT GCAGCAGATG
ATGGTCACCT GTCTCCAGCA TGACGGCCCC ACCGCGCTTC GAATTCCCCG TGGGTCTGGA
GAAGGGGTCC TACTCATGGA AGAAGGCTGG GAAGCTCTTC CAATTGGCCG AGGCGAATTG
CTGCGAGAGG GCAATGATTT GGTGATCGTT GCCTACGGAT CGATGGTGGC TCCCGCCATG
GAGACGGCTG CTTTGTTGGA GGCTTCTGGC TTGTCCGCCT CCGTGATCAA TGCGCGTTTC
TTAAGACCTC TCGACCAGGC CCTGATTCAT CCTTTGGCCC GTCGGGTTCC CCGTGTCGTC
ACCATGGAAG AAGGAACCTT GTCGGGTGGT TTTGGTGCCG CAGTGTTGGA GTCCTTGAAC
GATCACGACA TCAATGTTCC TGTTTTAAGG ATCGGTATTC CTGATCAACT GGTGGACCAT
GCAACGCCAC AGCAAAGCAA AGAAGCGTTG GGCCTGACTC CCAACCAAAT GAGTTTGAAA
ATTCAGCAGC GCTTTGGTTT GGGCTCGGAC GATGCAGCGA AATCCTCTCC GTTTCAAGCT
GTTCAAGCTT GA
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| Protein sequence | MHLGDLKHPN ELHGLSLAEL EDVARQIRER HLDVVSTSGG HLGPGLGVVE LTIALYQTLD
LDRDKVCWDV GHQAYPHKLL TGRFNSFDSL RQQRGVAGYL KRSESRFDHF GAGHASTSIS
AALGMALGRD NRGENFKCVA VIGDGALTGG MALEAINHAG HLPNTPLLVV LNDNDMSISP
PVGALSSVLN RARLSPPMQF LSGSVEESVR HLPFMGGELP AELNRLKGSM RRLAVPKVGA
VFEELGFTYM GPIDGHDIGE MTRTFQAAHR DGGPVLVHVV TKKGKGYPYA EADQVGYHAQ
SAFDLSTGKA IPSSKPKPPS YSKVFGQTLI KLCEQNSRVV GITAAMATGT GLDLLQKAVP
NQYVDVGIAE QHAVTLAAGM ACEGLRPVVA IYSTFLQRAY DQLIHDVGIQ NLPVMFVLDR
AGIVGADGPT HQGQYDISYL RAVPNFTVMA PKDEAELQQM MVTCLQHDGP TALRIPRGSG
EGVLLMEEGW EALPIGRGEL LREGNDLVIV AYGSMVAPAM ETAALLEASG LSASVINARF
LRPLDQALIH PLARRVPRVV TMEEGTLSGG FGAAVLESLN DHDINVPVLR IGIPDQLVDH
ATPQQSKEAL GLTPNQMSLK IQQRFGLGSD DAAKSSPFQA VQA
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