Gene Syncc9902_0317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_0317 
Symbol 
ID3743551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand
Start bp327793 
End bp328848 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content58% 
IMG OID637770485 
Productphotosystem II reaction centre protein PsbD/D2 
Protein accessionYP_376333 
Protein GI78183898 
COG category 
COG ID 
TIGRFAM ID[TIGR01152] Photosystem II, DII subunit (also called Q(A))
[TIGR01151] photosystem II, DI subunit (also called Q(B)) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.404544 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAATTG CTGTAGGACG CGCGCCTCAG CGGGGATGGT TTGACGTCCT CGATGACTGG 
CTCAAGCGCG ACCGCTTCGT ATTCATCGGC TGGTCTGGCC TACTTCTGCT CCCGACGGCC
TACATGGCTA TCGGTGGCTG GCTGACCGGC ACCACATTTG TCACCTCCTG GTACACCCAC
GGCATCGCGT CGTCGTACCT CGAAGGTTGC AACTTCCTCA CCGCTGCTGT TTCGACCCCC
GCTGACGCGA TGGGTCACAG CTTGCTGCTG CTCTGGGGCC CAGAAGCCCA GGGCGATTTT
GTCCGCTGGT GTCAACTCGG CGGCCTCTGG GCTTTTGTTG CCCTGCACGG TGCTTTCGCA
CTGATCGGCT TCATGCTGCG TCAGTTCGAA ATTGCTCGTC TCGTCGGCAT TCGTCCCTAC
AACGCCATTG CCTTCTCCGG CCCGATTGCG GTGTTCGTCA GTGTTTTCCT GATGTACCCC
CTCGGCCAGA GCAGCTGGTT CTTCGCGCCA TCCTTCGGTG TGGCAGCGAT CTTCCGCTTC
CTCCTCTTCT TGCAGGGCTT CCACAACTGG ACGCTGAACC CCTTCCACAT GATGGGAGTG
GCCGGCATCT TGGGCGGCGC TCTGTTGTGT GCCATTCACG GTGCAACCGT GGAAAACACA
CTGTTCGAGG ATGGTGAGCA AGCGAACACC TTTAAGGCGT TCGAACCCAC CCAGGAAGAA
GAGACCTATT CCATGGTCAC CGCCAACCGC TTCTGGAGCC AAATCTTCGG AATTGCGTTC
TCCAACAAGC GCTGGCTGCA CTTCTTCATG CTGTTCGTGC CAGTGATGGG CCTCTGGACT
AGCTCCATCG GCATCATCGG TCTGGCCCTC AACCTGCGCG CCTATGACTT CGTGTCACAG
GAAATCCGCG CTGCTGAGGA CCCCGAATTT GAGACCTTCT ACACCAAGAA CATTCTTCTG
AATGAAGGTC TGCGTGCCTG GATGGCACCG GCTGACCAGC CGCATGAAAA CTTCGTCTTC
CCTGAAGAGG TTCTGCCCCG CGGTAACGCT CTCTAA
 
Protein sequence
MTIAVGRAPQ RGWFDVLDDW LKRDRFVFIG WSGLLLLPTA YMAIGGWLTG TTFVTSWYTH 
GIASSYLEGC NFLTAAVSTP ADAMGHSLLL LWGPEAQGDF VRWCQLGGLW AFVALHGAFA
LIGFMLRQFE IARLVGIRPY NAIAFSGPIA VFVSVFLMYP LGQSSWFFAP SFGVAAIFRF
LLFLQGFHNW TLNPFHMMGV AGILGGALLC AIHGATVENT LFEDGEQANT FKAFEPTQEE
ETYSMVTANR FWSQIFGIAF SNKRWLHFFM LFVPVMGLWT SSIGIIGLAL NLRAYDFVSQ
EIRAAEDPEF ETFYTKNILL NEGLRAWMAP ADQPHENFVF PEEVLPRGNA L