Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_0139 |
Symbol | |
ID | 3744014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | + |
Start bp | 147667 |
End bp | 148665 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637770306 |
Product | type II alternative sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_376157 |
Protein GI | 78183723 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACCCG TCGCTACCGC TGCTTCAAAA CCAGCGACCT CTACCCGTTC CGTCAGTGTT GACGTCGATT TGGTGCGTTC TTATCTCCGG GATATTGGAC GGGTGCCATT GCTCACCCAT GAGCAAGAAA TCACCTTGGG CCGCCAGGTC CAGCAGCTGA TGGAGATCGA AACTCTCGAA GCTGAGCTGG AAAGCAGAGA TGGAGCCAAG CCCGCTCGCG ATCAACTAGC CAAGGCTGCC GAGCTTTCCA CGGTCCAGCT CAAGCGCAAG TTGCAGCAGG GTCATCGCGC TAAGGAGCGG ATGGTGGCCG CCAATCTTCG CCTCGTTGTG AGCGTTGCTA AGAAATACAC CAAGCGAAAC ATGGAGCTCC TGGATCTGAT CCAGGAAGGA ACGATTGGTT TGGTTCGTGG AGTCGAAAAG TTCGACCCCA CCCGTGGTTA CAAATTCTCT ACTTACGCCT ACTGGTGGAT TCGTCAGGGC ATTACTCGTG CCATTGCTGA GAAGAGCCGC ACAATTCGCC TGCCAATTCA CATCACCGAG ATGCTGAATA AGCTGAAAAA AGGCCAGCGA GAGCTCAGCC AAGAGCTAGG TCGCACTCCT ACCGTCACCG AATTAGCTCA ATTCGTTGAT TTGCCCGAAG ACGAAGTGAA AGATCTGATG TGCCGTGCTC GCCAGCCAGT GAGCCTTGAG ATGAAGGTGG GTGATGGAGA CGACACTGAA TTGTTGGAGC TTCTTTCCGG AGATAATGAG CTTCCCAGTG ATCAAGTCGA AGAAGATTGC CTGAAGGGTG ATTTGCGCAG CTTGTTGGGC CAGCTTCCCC ACCTGCAAGA ACAAGTGCTC CGCATGCGTT TCGGCATGGA TGGAGAAGAT CCGATGAGCC TCACAGGGAT TGGTCGCATT TTGGGGATGA GCCGCGACCG AGTTCGCAAT TTGGAGCGTG ATGGCTTGGC TGGATTGCGT CGCGTTAGCG ATCAGGTTGA GGCTTACGTT GCCTGCTGA
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Protein sequence | MAPVATAASK PATSTRSVSV DVDLVRSYLR DIGRVPLLTH EQEITLGRQV QQLMEIETLE AELESRDGAK PARDQLAKAA ELSTVQLKRK LQQGHRAKER MVAANLRLVV SVAKKYTKRN MELLDLIQEG TIGLVRGVEK FDPTRGYKFS TYAYWWIRQG ITRAIAEKSR TIRLPIHITE MLNKLKKGQR ELSQELGRTP TVTELAQFVD LPEDEVKDLM CRARQPVSLE MKVGDGDDTE LLELLSGDNE LPSDQVEEDC LKGDLRSLLG QLPHLQEQVL RMRFGMDGED PMSLTGIGRI LGMSRDRVRN LERDGLAGLR RVSDQVEAYV AC
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