| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0117 |
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| Symbol | |
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| ID | 3744031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 121714 |
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| End bp | 124734 |
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| Gene Length | 3021 bp |
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| Protein Length | 1006 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637770283 |
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| Product | cyclic nucleotide-binding domain-containing protein |
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| Protein accession | YP_376135 |
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| Protein GI | 78183701 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.152098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAGTA CCTCAGAAAC ACTCTCCGCT CTTCTTTCGC GCTTTTCTGC CTTCCAAGAT
ATTGATGATG CAGACTTACA GTGGTTAGCA ACTCATTCTA AGCCCTTTCA TTGCAGTGTT
GGTCAAGCTC TTTTATTCAG TGATCGCTTG CCAGAATATT GTTATTGCAT CCTTGAGGGG
CGTGGACGTG TTCTACATCA TGATCCTGCT TTACGTCGTC CCGTTACTCT TGCCTATGCA
CAACCTGGCG ATCTTATCGG GTGGGCAGGT TTAGTTCGAC GCAGCCCTTG TGAATGGATA
ACAGCCGCTA TGCCACTTAA GCTTGTCGGT TTTCCTGCTG ATATTTTTTA TCAACTAGAG
CTGCGTAGTG AACCTTTCAG AAATTGGTTA GATACTAATA ATTCTCCTGC AGAGTTGATG
ACTGTCCTGT CTCATTCTCT CCGTTCGAGA CCTTTGGCAG AACCTAACGA ACGAGAGGTT
TTACGTAGAC TTCTTCCTTC TATGAAGTTG CATCCTGCAA GATCTTTGCG CTCCATAGCA
GATTTTTCTG CTGAAGATAC CTTATTACTG TGGAACTCAA AGCCACCCGG TTTCACCGTT
CCTGTCGGAC AACCTATAGA TTCCGAAATA TTAGATTCTA TCCCTTCTGG TTTTCCTCTT
CGTTTAATAT CAGTTGATAA ATCTTGTTGG TCACGTGAAC TCTACCCTCC TTTAAAAGCT
CCTCCTGATT CCGATATATC CCCCGCTAGT GACTTGTGGG GTAATGATCG TTATTCTGAG
CTGCTGGTTC CAGACCCTCA AGGTAGCAAA GAATCACTTC CTGAAATAAA CGCTACTCCA
TTATCAAATA AAAGTTCAAA ATTCTTCTGG CGCGGACGCC AAATACCAGT TGTTACTGGT
GTTGGTCCTA TTGAGCAGAC CATGGCATGT CTCGAGATGT TGTCTTTATT TCACAATGTT
CCCTTCCGTC GGGATGTCAT TGAGCGTGCT TGTAAGGGTT CCTTGAAAGG TGATAAGCCA
TCACTGGAGC TTACTGGTGA TCTCTCTACC GTAATGGGTT TTGTCGGGAC GATTAGTGAT
ATTCCCACTG CTCAACTTCC TCGTCTTTCT TTTCCATGTT TTGCATTGCT TGATAAGCAA
TTAATTATGA TTCATGATAT CTCTCGTGAT ATCGTCCAAG CTGTAATTCC TGAGTATGGC
CGTGTTGTTT TTCCATTAAT TGAGTTATTG GAAAATAATC CTGGAGTTAG AGTATTGTCT
TTGTCTCCAG GTCGCGATTC ACAGCAAAAA AAGCTTACTT TCAAATGGTT TGTCCCTCAA
CTTAAGAAGT ACCGTCGCAG TTTGCTTGAG GTATTAGCAG CTTCTCTTGT TTTACAACTC
CTCAATCTTG CTCAGCCTCT TGTTATGCAA CAGATTTTCG ACAAAGTAAT TGTTCAGCAG
AATCTTGATA CTCTTTATAC TTTAGGCTTT GTTTTACTTG GCGTAAGTCT TTTCCAAGGC
CTCATTGGTG CTGTGCGTAC TTATCTTTTT GCTGACACTA CTAATCGCAT AGATATAGCA
CTTGGTGCTC AAGTTATACA GCATTTACTT CGTTTGCCAT TGCGATATTT CGATAAGCGT
CCTGTTGGTG AGTTGCAGAC CCGTATTGCA GAATTAGGTA ATATTCGCGG TTTCCTAACT
GGTAGTTTGC TAACACTTGC CTTGGATTCA GTTTTTTCTG TTATCTATAT TGCCGTAATG
ATCGTGTACT CCGGAGTTTT AACTGCTGTA ACTCTAGGTG TTGTTCCTTT ATTTCTTGGC
CTCACCATTG TTGCTTCGCC CATTATTCGT GGTCAACTTA GAAAAGCAGC AGAAAAAAAT
GCTGTTACTC AAAGTTATCT CATCGAGTCC TTGAATGGTG TTCAGACCAT TAAAGCTCAG
AATGCAGAGA ATAACGTTAG ATGGCAGTGG CAACGACGGT ATTCCGGTTA TATGAGTGAA
TCCTTTCGAA CTTTAATGAT CGGTGTCTCC ACTGGCACAA TCGGAAGTTT TCTTAATCAG
TTGACTGGTC TTCTTACATT GTGGGTTGGT GCCTATCTTG TCATTAAGGG TCAATTAACT
ATTGGTCAGT TAATTGCTTT CCGCATTATT TCCGGATACG TTGTTGGACC TCTTCTCAAT
CTCGCTACAA GTTGGCAAAG TTTCCAGGGA GTCGCACTTT CCATGGAGCG CTTGAGCGAT
GTTATTGATA CTGAATCTGA GGGTGGCGAA GTTGACTTGG ATTTACTTCC ACTACCTCCT
GTTGCTGGTG AAGTGGTTTT TCAAGACGTG GACTTTAGGT TTAATGATCT CGCACCATTA
GTTATTAATC GGGTATCTTT CTCCGTAACT GCTGGCTCTT TTGTCGGAAT CGTTGGTCGA
AGTGGTAGTG GTAAAAGTAC GATCATGAAA TTATTACCCC GCTTATATGA AACTGTTAGT
GGTAGAATTT TAATAGATGG TTATGATATC TCGAAACTTC AGCTTGGTTC TATTCGTCGA
CAGATTGGAA TTGTTCCTCA GGAAAGTCTA TTATTTGAGG GATCTATTCG TGACAACATA
GCACTCACTA CGCCTGAGGC GACTCCTGAA GAGATTGTTG CAGCTGCCAA AATTGCATGT
GCACATGACT TCATTATGGA ACAGCCTGAT GGGTATGCTT CTCGTGTAGG TGAACGAGGC
GCTGGCTTAT CTGGAGGTCA AAGACAACGC ATTGCTATCG CCCGTGCAGT CTTACAAGCT
CCCTCTTTAC TAATACTTGA TGAAGCCACA AGTGCTCTTG ATTATTTAAC CGAACGTCAG
GTTTGCGTTA ACCTTAAAAG GCATTTTGAA GGTTCTACTG TTTTCTTTAT CACTCATCGT
CTTTCTACCA TTCGCTCATC AGATGTTATT ATTATGCTCG AATCGGGTCG TTTAGTTGAG
CGTGGTACTC ATGATGAGTT AATTAAGATG GAAGGTCGTT ATTTCGCGCT TTATTCACAA
CAGGAGTCTG ATCTTGACTG A
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| Protein sequence | MSSTSETLSA LLSRFSAFQD IDDADLQWLA THSKPFHCSV GQALLFSDRL PEYCYCILEG
RGRVLHHDPA LRRPVTLAYA QPGDLIGWAG LVRRSPCEWI TAAMPLKLVG FPADIFYQLE
LRSEPFRNWL DTNNSPAELM TVLSHSLRSR PLAEPNEREV LRRLLPSMKL HPARSLRSIA
DFSAEDTLLL WNSKPPGFTV PVGQPIDSEI LDSIPSGFPL RLISVDKSCW SRELYPPLKA
PPDSDISPAS DLWGNDRYSE LLVPDPQGSK ESLPEINATP LSNKSSKFFW RGRQIPVVTG
VGPIEQTMAC LEMLSLFHNV PFRRDVIERA CKGSLKGDKP SLELTGDLST VMGFVGTISD
IPTAQLPRLS FPCFALLDKQ LIMIHDISRD IVQAVIPEYG RVVFPLIELL ENNPGVRVLS
LSPGRDSQQK KLTFKWFVPQ LKKYRRSLLE VLAASLVLQL LNLAQPLVMQ QIFDKVIVQQ
NLDTLYTLGF VLLGVSLFQG LIGAVRTYLF ADTTNRIDIA LGAQVIQHLL RLPLRYFDKR
PVGELQTRIA ELGNIRGFLT GSLLTLALDS VFSVIYIAVM IVYSGVLTAV TLGVVPLFLG
LTIVASPIIR GQLRKAAEKN AVTQSYLIES LNGVQTIKAQ NAENNVRWQW QRRYSGYMSE
SFRTLMIGVS TGTIGSFLNQ LTGLLTLWVG AYLVIKGQLT IGQLIAFRII SGYVVGPLLN
LATSWQSFQG VALSMERLSD VIDTESEGGE VDLDLLPLPP VAGEVVFQDV DFRFNDLAPL
VINRVSFSVT AGSFVGIVGR SGSGKSTIMK LLPRLYETVS GRILIDGYDI SKLQLGSIRR
QIGIVPQESL LFEGSIRDNI ALTTPEATPE EIVAAAKIAC AHDFIMEQPD GYASRVGERG
AGLSGGQRQR IAIARAVLQA PSLLILDEAT SALDYLTERQ VCVNLKRHFE GSTVFFITHR
LSTIRSSDVI IMLESGRLVE RGTHDELIKM EGRYFALYSQ QESDLD
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