| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plut_0503 |
|---|
| Symbol | gltD |
|---|
| ID | 3745981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium luteolum DSM 273 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007512 |
|---|
| Strand | + |
|---|
| Start bp | 591893 |
|---|
| End bp | 593371 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637768543 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_374434 |
|---|
| Protein GI | 162139385 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.114994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.266316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAG TTAAGGGTTT CATGGAGTTC CAGAGGGCAG TGCCTCGGGA CAGGGCGCCG
CTGGAGAGGA TCAAGGACTG GAACGAGTTC CATCTGGAGA TGGAGGACGC GGGGCTCCGC
GATCAGGGCG CGCGCTGCAT GGACTGCGGC ACCCCGTTCT GCCATACCGG CATTATGCTT
GCCGGAATGA CGACCGGATG TCCGATCCAC AACCTCATTC CCGAATGGAA CGACCTTGTG
TACAACGGCT ACTGGGCGGA TGCCTACGAC CGGTTGATGA AAACCAACAA TTTCCCCGAG
TTCACCGGAC GGGTATGTCC CGCACCCTGC GAAGGGTCCT GCGTGCTCGG CATCATCGAG
CCGCCGGTCA CCATCAAGAA CATCGAGTGC GCAATCATCG AACGGGCGTT TGCCGAGGGT
CAGGTCGAAC CCAAATCAAT CGCCTTCCGC ACCGGCAAAA GCGTTGCCGT CGTCGGGTCG
GGTCCCTCGG GACTTGCGGC CGCCGACCAG CTCAACAAAG CCGGTCACAC GGTCACGGTG
TTCGAGCGTG ATGACCGTTG CGGCGGACTG TTGATGTACG GCATCCCGAA CATGAAGCTG
GACAAGGAGC AGGTGGTGCA GCGCCGTATC GGACTCATGC AGCAGGAAGG GGTCGACTTC
AGGGTGAGGA CGGAGGTCGG TGTCGACTTT CCGGCTGAGC AGCTGCTCTC GGACTTCGAC
GCCGTAGTGC TCTGCACCGG TTCGACGAAG CCCCGCGACC TCGATGCAGA GGGACGCAGG
GAGGCTTCAG GCATCCATTT TGCAATGGAC TTCCTCCGTT CTTCAACGAA ATCCCTGCTT
GATAGTACGG CCCCCGCCCT CTCCGCCGAA GGCAGGCATG TCGTCGTCAT CGGCGGCGGT
GACACCGGCA CGGACTGCGT GGCAACCTCG ATCCGTCAGG GATGCATGAG CGTCGTCCAG
CTGGAGATTA TGCCGAAACC CGCGCTCGAA CGGCCCGATG ACAACCCATG GCCCCAGTGG
CCGAAGACCT TCAAGGTCGA CTACGGACAG GAAGAGGCCG CTGCCCTGCA GGGCGACGAC
CCGAGGAAAT ACTCCATGAT GACGAAGAAG TTCATCACGG ACGGCAGCGG CAACCTGAAG
GGTGTAGAGG CTTCGGAAGT GGAGTGGGTC AAAAAGGACG GCCGTTTCAT CCCGCAGCCG
GTCTCGGGTA CCGAACAGAT TTTCCCTGCC GAGCTCGTGC TGCTAGCAAT GGGTTTTCTC
GGTCCCGAAG AGGCTCTGCT CGACCAGCTC CATGTTGAGC GCGACCTGCG CATGAATATC
AAGGCCCCCG AAACCACCTA CCGGGCAGGT GAGGGAAAGA TATTTGCCGC AGGCGACGCC
CGCCGCGGCC AGAGCCTCGT TGTCTGGGCC ATTCAGGAGG GCCGTGCGGC AGCGCGCGAA
TGCGACCGTT TTCTCATGGG AGAAACGTTC CTTCCGTAA
|
|---|
| Protein sequence | MGKVKGFMEF QRAVPRDRAP LERIKDWNEF HLEMEDAGLR DQGARCMDCG TPFCHTGIML
AGMTTGCPIH NLIPEWNDLV YNGYWADAYD RLMKTNNFPE FTGRVCPAPC EGSCVLGIIE
PPVTIKNIEC AIIERAFAEG QVEPKSIAFR TGKSVAVVGS GPSGLAAADQ LNKAGHTVTV
FERDDRCGGL LMYGIPNMKL DKEQVVQRRI GLMQQEGVDF RVRTEVGVDF PAEQLLSDFD
AVVLCTGSTK PRDLDAEGRR EASGIHFAMD FLRSSTKSLL DSTAPALSAE GRHVVVIGGG
DTGTDCVATS IRQGCMSVVQ LEIMPKPALE RPDDNPWPQW PKTFKVDYGQ EEAAALQGDD
PRKYSMMTKK FITDGSGNLK GVEASEVEWV KKDGRFIPQP VSGTEQIFPA ELVLLAMGFL
GPEEALLDQL HVERDLRMNI KAPETTYRAG EGKIFAAGDA RRGQSLVVWA IQEGRAAARE
CDRFLMGETF LP
|
|---|
| |