| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A3984 |
|---|
| Symbol | |
|---|
| ID | 3749169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | + |
|---|
| Start bp | 909269 |
|---|
| End bp | 911152 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637762263 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_368227 |
|---|
| Protein GI | 78065458 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.430813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGAT CCAAAGCATC ATGGCTGTCA CTCAGTGCTT TCCTGTTCGA TCTGCTGGCG
GTTGTCGTCG CGTGGTTGTT CGCCTATCTT GTTCGCTTCA ACGGTAGCGT TCCGCCCGAT
TTCCTGAGGG GTTCGCTGAC TGCGCTCGCC TGGGTGCTTC CCGTCTATGC GCTGACGTTC
CACCTGTTCG GCCTGTATCG CGGACTGTGG GTGTTCGCGA GCCTGCCGGA CCTGGTGCGG
ATTTCGAAGG CGCTTGCGGG CGGCGGCGTG ATTGTGATGA TCGGCGCCGT GATGTTCCAG
CCGTCGCCGA TCATCCCGCG TTCCGTGCTG CTGGTCTCCC CGCTGATGCT GTTCCTGATG
ATGGGCGGCG CTCGTGCGCT GTATCGCGCG ATGAAGGAGT TTTACCTGTA CGGCGGCCTC
GTCGGGCAGG GCAAGCCGGT GCTCGTGATC GGCGCGGGCA CGGCAGGCGC GAACCTGGCG
CGCGAATTGT CGCGCTCGGG CGAATGGCGT CTCGTCGGCC TGCTGGATGA CGACCAGACG
AAGCAGGGCC GCGAAATCTA CGGCTACAAG GTGCTCGGCT CGCTCGACGA CGTCGCGCAC
TGGACCGAGG CACTGAAGAT CGAATACGCG ATCGTGGCGA TTCCGTCCGC GTCGGTCGAG
GTGCAGCGCC GGACGGCGAC CCTCTGCGTG CGCGCCGGCT TGAAAGTGAT GGTGCTGCCG
TCGCTGACCG CACTGATGCC GGGGCAGGGC TTCCTGTCCC AGATCCGTGA GATCGACCTC
GAGGATCTGC TCGGCCGCGA CGCCGTGACG ATCGACACGC CGCACGTCGA GGCGCTGCTT
CGCGGTCGTG TCGTGATGGT GACGGGCGCT GGCGGCTCGA TCGGTTCCGA GCTATGCCGG
CAGATCCTGC GTTTTGCGCC AGCGCAACTC GTCGCGTTCG ACCTGTCCGA GTACGCGATG
TACCGCCTGA CCGAGGAACT GCGCGAGCGC TTCCCCGATC AGCCGGTCGT GCCGATCATC
GGCGACGCGA AGGATTCTCT GCTGCTCGAT CAGGTGATGT CCCGCCACGT GCCGCATATC
GTGTTTCATG CGGCGGCATA CAAGCACGTG CCGCTGATGG AGGAGCACAA CGCATGGCAG
GCGCTGCGCA ACAACGTGCT CGGCACGTAT CGCGTGGCCC GTGCGGCGAT CCGCCACGAC
GTGCGTCACT TCGTGCTGAT CTCGACCGAC AAGGCGGTCA ATCCGACCAA CGTGATGGGC
GCGAGCAAGC GCCTCGCGGA AATGGCCTGC CAGGCGTTGC AGCAGACGAG CGGGCGCACT
CAATTCGAAA CCGTGCGTTT CGGCAACGTG CTGGGCAGCG CGGGCAGCGT GATTCCGAAG
TTCCAGCAGC AGATCGCGAA GGGCGGCCCG GTGACGGTCA CGCATCCGCA GATCACGCGC
TTCTTCATGA CGATCCCGGA GGCGTCGCAA CTCGTGCTGC AGGCGTCGAG CATGGGGCAC
GGCGGAGAGA TCTTCATTCT CGACATGGGC GAGCCGGTGA AGATCGTCGA TCTCGCATGC
GACCTGATCC GCCTGTACGG TTTCTCGGAA GATCAGATCC AGATCGAGTT CACCGGGCTG
CGGCCCGGCG AGAAGCTCTA CGAGGAGCTG CTCGCGGACG ACGAGACAAC GACGCGCACC
CCGCATCCGA AACTGCGGAT CGCGCGTGCG CGGGAAGTAC CGGACAATTT CCTCGACGAG
CTGCTGCCGT GGCTGATGCA GCATCGTGTC CTGCCCGATG ACGAAGTGCG GCGAGACCTG
CGGCGCTGGG TGCCGGAATA CCAAACGGCC GTGCCCCCGA CGCTGCAGAG CGTGCCATCG
GTGCGCGTCG TATCGAACGG GTAA
|
|---|
| Protein sequence | MLRSKASWLS LSAFLFDLLA VVVAWLFAYL VRFNGSVPPD FLRGSLTALA WVLPVYALTF
HLFGLYRGLW VFASLPDLVR ISKALAGGGV IVMIGAVMFQ PSPIIPRSVL LVSPLMLFLM
MGGARALYRA MKEFYLYGGL VGQGKPVLVI GAGTAGANLA RELSRSGEWR LVGLLDDDQT
KQGREIYGYK VLGSLDDVAH WTEALKIEYA IVAIPSASVE VQRRTATLCV RAGLKVMVLP
SLTALMPGQG FLSQIREIDL EDLLGRDAVT IDTPHVEALL RGRVVMVTGA GGSIGSELCR
QILRFAPAQL VAFDLSEYAM YRLTEELRER FPDQPVVPII GDAKDSLLLD QVMSRHVPHI
VFHAAAYKHV PLMEEHNAWQ ALRNNVLGTY RVARAAIRHD VRHFVLISTD KAVNPTNVMG
ASKRLAEMAC QALQQTSGRT QFETVRFGNV LGSAGSVIPK FQQQIAKGGP VTVTHPQITR
FFMTIPEASQ LVLQASSMGH GGEIFILDMG EPVKIVDLAC DLIRLYGFSE DQIQIEFTGL
RPGEKLYEEL LADDETTTRT PHPKLRIARA REVPDNFLDE LLPWLMQHRV LPDDEVRRDL
RRWVPEYQTA VPPTLQSVPS VRVVSNG
|
|---|
| |