| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3072 |
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| Symbol | |
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| ID | 3725779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 3586652 |
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| End bp | 3587314 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637752683 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_358477 |
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| Protein GI | 77920662 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01993] pyrimidine 5'-nucleotidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0000000791447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATGCA TCCTGTTCGA TCTTGACAAT ACCCTCTATC CGCCCCGCTG CAATCTGTTC
GGGCTCATCG ACAAGCGGAT CAACAGCTAC ATGCACGAGG TGGTGGGTAT CCCCCTGGAC
GAGGTCGATA CTTTACGCCG CCGGTACTGG CAGGATTACG GCGTCACCAT GCAGGGTCTC
ATGCGCCATC ACCATGTCGA CCCCGAGGAC TATCTGCACT ATGTGCACGA CGTGGATGTC
GCCAGCCGTT TGCAGGCCGA ACCCGAACTG CGACAGGCGC TGGTTTCCCT GGCGCAGCCC
AAGGTGATTT TTACCAACAG CAGTCGCGCG CATACCGACC GGGTGCTCGG CGCTCTGGGG
ATCGCCGATC TGTTCGACCA GGTATTCGAT ATCCGGGTGG CCGATTATAT GCCAAAACCC
TATGTCCAGC CGTATCACAG AGTGCTTGAG CATCTTGGCT TGACCGGCAG CCAGTGCGTT
ATGGTGGAAG ACAGCGTTGC CAATCTCAAG CCGGCCAAGG CGCTGGGGAT GACCACCATT
CTGGTAGGCA ACGCAGCCGT CGAGCCCTTT GTCGACCGGC AGTTGGCCGA AGTGGTGCAA
TTGCCCGAGG TGCTGGCGAA TTGGGCAGCC ATCGGTGGCT GCGCGACGGT GGGAGGAGAG
TGA
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| Protein sequence | MECILFDLDN TLYPPRCNLF GLIDKRINSY MHEVVGIPLD EVDTLRRRYW QDYGVTMQGL
MRHHHVDPED YLHYVHDVDV ASRLQAEPEL RQALVSLAQP KVIFTNSSRA HTDRVLGALG
IADLFDQVFD IRVADYMPKP YVQPYHRVLE HLGLTGSQCV MVEDSVANLK PAKALGMTTI
LVGNAAVEPF VDRQLAEVVQ LPEVLANWAA IGGCATVGGE
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