| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3062 |
|---|
| Symbol | hemD |
|---|
| ID | 3725769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 3578224 |
|---|
| End bp | 3579765 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637752673 |
|---|
| Product | uroporphyrinogen-III methylase |
|---|
| Protein accession | YP_358467 |
|---|
| Protein GI | 77920652 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase
[COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 59 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTT GCGAAAACAG CGCCACAGGC ATCGTTTATC TGGTCGGAGC CGGTCCCGGC
GATCCCGGCT TGCTGACCGT GCGGGGATTG CAGTGCCTGC GCCGTGCCGA AGTCGTGGTC
TACGATTACC TGGCCAATCC GCAGCTGCTG CATGAGGCAC CGGCCACGGC CGAACGCATC
TATGTCGGCA AAACGGCTGG CCACCATCAC CTGCCTCAGG AGAAGATCAA CGCGCTGCTG
GTCGAAAAAG CGCGTCTGGG CAAGGTGGTG GTGCGTCTCA AGGGGGGTGA TCCCTGTCTT
TTCGGTCGGG GCGGCGAAGA GGCCTGCGAA CTGGCCGAAG CGGGTTTGCC TTTCGAGATC
GTGCCGGGTG TCACCGCCGG TTTCGGCGCC GCCATCTATG CCGGGATTCC CTTGACCCAT
CGTGATTACA CCACCAGTCT GGGTTTGATC ACCGGCCATG AAGATCCGAA AAAGAAGGTG
TCGAGTCTCG ACTGGTCGAA ACTGGCCACC GGGGTCGGTA CCCTGCTGTT TTACATGGGC
ATGGGCAATC TGGCCACCAT CACCAAAAAG CTTGTGCAAC ACGGTCGCGC GCCCGACACT
CCGGTGGCCG TGGTACGCTG GGGCACCACC CCGCGGCAGC AGACCTTGGT CGGCACGCTG
GCCGATATCA CCGAACGCGT GCAGCAGGCC CGCCTGGGCC CGCCGGCCAT CATCGTGGTC
GGTGAAATCG TGGCACTGCG CAAGCAGTTG CGTTGGTTCG ACAACCGGCC GCTGTTCGGG
CGGCGCATTC TGGTGACCCG GGCCGCCGGC CAGGCCGGTG TCCTGACCGA GGGCTTGCAG
GCCGCCGGGG CCGAGGCCAT CTGCTGTCCG ACCCTGGAGA TCGTGCCGCC TCCCGACTGG
CAGGAGCTGG ATGCCGCCTT GCAGCAGCTG CCCGGTACCG ATGTATTGGT GCTGACCTCC
GTTAATGCGG TAAACTATTT CTTCGAACGG TTGTTTGCCC TGGGGCACGA CAGTCGCCTT
CTTCATGATG TTTGTATCGC CGCGGTGGGC CCCAAAACCG CTGCCGCTCT TCGGCAGTAT
GGCCTGCGCG CCGATCTGCT GCCCGATGAG CAACGCGCCG AAGGGGTGCT GGAGGTGCTT
CTTGACAGGG GCGTGACCGG CAAGCGCATT CTCTACCCCC GTAGCCAACG GGCCCGCGAT
CTGTTGGTTA CGGAACTGTC CGCTGCCGGT GCCGAGGTCT GTGCCCCGGT GGCCTATCAT
ACCCGTGCCG CCGTCGGTGC TGCCGAGCAG CTGCGTGAAG CCCTCGAGCA GGGTGTCGAT
GCCGTGACCT TTGCCTCGTC CTCGGCGGTG GATCATTGCC TGCAGGCTCT TGGCGATGAC
GGTCAGCGGC TGCTGGCAGG GGTGACGATC GCCAGCCTCG GCCCTCTGAC CAGTGACACC
GTCCGCCGAC ACGGTCTGGA GGTTGCCGTG GAGGCTGCGG TGCCGACGGT GGAGATGCTG
ATTGAGGCTT TGCAGGGGTA TTTTGGCGAG CTGGAGGCAT AG
|
|---|
| Protein sequence | MNRCENSATG IVYLVGAGPG DPGLLTVRGL QCLRRAEVVV YDYLANPQLL HEAPATAERI
YVGKTAGHHH LPQEKINALL VEKARLGKVV VRLKGGDPCL FGRGGEEACE LAEAGLPFEI
VPGVTAGFGA AIYAGIPLTH RDYTTSLGLI TGHEDPKKKV SSLDWSKLAT GVGTLLFYMG
MGNLATITKK LVQHGRAPDT PVAVVRWGTT PRQQTLVGTL ADITERVQQA RLGPPAIIVV
GEIVALRKQL RWFDNRPLFG RRILVTRAAG QAGVLTEGLQ AAGAEAICCP TLEIVPPPDW
QELDAALQQL PGTDVLVLTS VNAVNYFFER LFALGHDSRL LHDVCIAAVG PKTAAALRQY
GLRADLLPDE QRAEGVLEVL LDRGVTGKRI LYPRSQRARD LLVTELSAAG AEVCAPVAYH
TRAAVGAAEQ LREALEQGVD AVTFASSSAV DHCLQALGDD GQRLLAGVTI ASLGPLTSDT
VRRHGLEVAV EAAVPTVEML IEALQGYFGE LEA
|
|---|
| |