Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_2811 |
Symbol | |
ID | 3725516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 3277808 |
End bp | 3281395 |
Gene Length | 3588 bp |
Protein Length | 1195 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637752420 |
Product | hypothetical protein |
Protein accession | YP_358216 |
Protein GI | 77920401 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAATA TTCTGATTTT CCTTCAGGCT TATCTTTTCG GGCGGCTAGG CTCCCGAATC CTTGGGCTGA TGCTAATCCT GTCACTGATC TGGTGGGCCG GCCCCTACGT AGGCATCGAT GATACCTCGT TGCGTATTTA TCTCATCCTT GGAACCTTAA CTCTGTTTTT CGGCATCTGG TTGGTACGCA AAAGCATCGC TAAACGGCGT GGCAATCAAT TCAGACAAGA CCTCGACTCT CAGACAGGCC AGGACCAATC ACGCCAATTG GAAATTGAAG AGCTCAAGGC CAAGATGAAC CAGGCCGTCG CCTCGTTAAA ATCTTCCGAA CTTGGAAGTC ACCGTCGTGG CAATGCCGCC TTGTACGCCC TGCCCTGGTT CATGATCATT GGCCCTTCGG CAGCCGGGAA AACCACCTTA CTGCGCAACT CCGGGCTGCA TTTCCCCTAT GCCAACGGCG AAGACATCGA CATACGAGGC TTTGGTGGCA CTCGCAATTG CGACTGGTGG TTTTCCAACG AAGCGGTTTT GCTCGATACA GCCGGACGCT ATACCACGGA GCAGGACGAC CACGAAGAAT GGTTGGCCTT TTTAAGTATG CTGCGCAAGC ATCGCCGCCA GCAACCTCTG ACTGGCGCTA TTGTCGCCAT CAGCCTATCG GACCTGCTAA CAGCCGATAC CCAGGAACTG GAGCGTCATG TCAAAATCAT TCGTGATCGC ATCAATGAAT TAACCACTAA ACTCGGATGT ATTTTCCCTA TTTATATCGT TTTCACCAAA TGTGATCTTC TCTACGGTTT TTCTTCCTAT TTTGCGGATC TGACTCCCAA GGAGAGGGAA CAAGTCTGGG GCAGTTGGCT GGGGCACGAA AAGGATAGCA ACATCTGCCA GGCCTTTATC CGCAGAATGG AAACTCTACA CCATCGCCTA TGCGAGTTGC GGTTGCAGAA ACTCTCCATG GTCCGGAACA TGCGCGCCAA AAGCGAACTT TTTGATTTCC CCTCCCAGTT CGAGGCTGCT AAAGATCGTC TTGTCGCATT CATTTCGCGA CTAACTGAAG CAAACCCCTA CCAGGACACC CCTCACTTTT GCGGCATCTA TCTGACCAGC GCCACCCAGG AAGGTACCCC CCTGCAGAAA ATCCTTGGCA ATATACGCCA GGCCTTTGGT TATGTGGATG AAGACCAATC CTCAGAACAG GCAGAAACTA AAAGCTTTTT TGTAAAGGAT TTTTTCAAAG AGGTTGTTTT TCCCAATGCC AATGATGTCA GTCGAACAAA AAAGCAGGGC ATACTGCACC GCGCTCTGAA AACCGCCTGC ATCATAACAT CCCTGGCTGT CATCACAGGC TGTTTCCTGC TACTCAGCAC GACTCTGACC ATGAATACCT TGCTGCTTAA AAAAGGAACC GACACCTCGG AGCATCTGGC GCAGGAAGCG CAAACGAAAA ACAACGGCGT GAATCAGGAC TTTAAGGCAT TGACACAGGT TCTGGCACAC TACCGCACCC TTATGAATTA CGAAAAACAC CTGCCGCTGT CTTATACCTT AGGAATCTAC GAGGGGGACA AACAATTGCC GGCGATCCGC TCTATTCTGC TTAACGCTTT TAAACGGATC TTTTTCAAAC CGGCAATCAA AGATCTGGAG ATGCGTCTGG TCAACTATTC CCAGGTATGG GCGGCGGCCG ACCTGCAACG CCAGGATCAA ATCCGCGACC CCTATTACAA AACGCTAAAA TGCTACCTGA TGCTCAGTAC ACCCAAACGG CTGGAGGCCG AGTTTGCCGC GCCAGTACTG CAGACCCTTA TCCAGGAACG TTTGATGGGA TTTGCCAAAG GGCAGTCTCT GGATAAGGAC TCGCAACGAC AGCTGTCCGA ATTGATCCAT CTCTATTTAT CCCACATGCA GATTGACCAA AACCACCCCG ATTATATGGA GACTGTTAAA CTCGAAGCAT CTCTGGTAAC CGACGCGCAA AACCACCTCA AAGCCATACC GGATGCCGGC CGCCTTTACA CACAAATCCT CAATAAGGGC AAATTAATAG CCCCTGCCCT CCACCTCAAG GACATGATCA AAGGGCCAGG ACGAAGTGTT CTGGCCAGCT CCTTCACCAT GCCTTTCATG TTTACCAGCA AAGGTTGGCA CAATTATGTG CAGCCTGAAA TCGACAACTT GGTCCATATC GCCTGTCAGG GAGATTGGGT CACCGGTTAT CTCCCGGATA GTCTGTCCGA TGCCAGCGGT ACGAAAACCG ACACCTCGGC AAATAATCCA TTGGCGGTTC AACTCGAAAC CGAGATCCGC GCCTTGTACT TTGCGGACTA CGTTGACCAT TGGTTCAGTC TGCTGGCTGA AATTCAATTG CCACCATTTC ACTCCTTGGA TGACGCTGCA AAGAAAATGC TGCTGCTGGC CCGCAATGAC GGCCCCATCG CTGAACTGCT GCAAGTCGTC TCCAGAAATA TCAACATTGG CCAAGCAAAA GGGAGCTTGG CAAGCGACGG CTCAGTGCAA AGTGCCTCGC TGGTCCAGGA ACTGGAAAAT CCTCTTCATG ACCTGCGGAA ACTGACCGAT CCCGGCGACA AGATGAATAC CAGCCTGCTC ATCAACCAGT ACCTGCTGGC CTTAACAGCG GCCCAGGCAG AAATCGAACA AATGGCGGCA GCCGTGGATG TGCCCCAGCA GTCATTTCAA TACGCGTCGA CCATCCTGGG CAGCAACGGC GTCACCAGTT CCGAGCTGTA CAAATGCTGG CTATCCACCA ACAGTCTGCT CAACGGTACC GACGTCCGCA CCCGCAAGGT AGCTGAGCAT TTGCTGTACA AACCGATCGC TGGAGCCTGG AAAGCCATCA TTCAGCAGAC ACAGTCTTAT GTACAAAACC AATGGAGCAG CACGGTTTTC CTGAATTACC AAGGGAAAAT AGCCGGTAAA TTCCCCTTTA GTAACAACGG TGCAGATGCC TCGCTTAATG ATGTAGCGGA CTTTTTCCGT CCCGAAGATG GTCTGATCTG GGCTTTTACA GACGATCAAC TCAAACCCTT TCTGCGTAAA GAGCGTAATC GGTGGACCGA AAAAACCTGG CTTGGTACCG GTCTCGCTTT TGACAAAAGC CTGTTACGTT CTTTGGGACT GGCCTCGCGC ATTACCTCTG GGATGTTTCG TCGCGGTCAG ATTCAACCCG ATGTTCACTT TTCCATCTAT CCGATCCCCA GCCAGGGACT ACGAGTCGTA CGCTTCGAAA CCAACGGTCA ACAAATGATT TATCAGAACG AACCGCAGGA ATGGAAAAGG TTCCAATGGC CGGGAGATGA AGACCAGAAC AGCGCGTTCA TCGGCTGCAT CCCAAGCGGC AATCAATCCA TGGTCAAAAT CAAATTCTCC GGCGACTGGA GTCTTTTTCA CCTGCTAAAC AAAGCCAAAA TTACGCAAAA CCATAACCTG TACACCTTGG ACTGGAAGCT GAAAACTGGC CAGAATAACG ACGCCATAGT ACACCTTAAA CTTCGTCCCG ATCGCCACAG CAATGTGTTT GCCCAAGGAC TGTTCTCGCA GTTTCGACTG CCGAGCAACA TTTTTTAA
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Protein sequence | MQNILIFLQA YLFGRLGSRI LGLMLILSLI WWAGPYVGID DTSLRIYLIL GTLTLFFGIW LVRKSIAKRR GNQFRQDLDS QTGQDQSRQL EIEELKAKMN QAVASLKSSE LGSHRRGNAA LYALPWFMII GPSAAGKTTL LRNSGLHFPY ANGEDIDIRG FGGTRNCDWW FSNEAVLLDT AGRYTTEQDD HEEWLAFLSM LRKHRRQQPL TGAIVAISLS DLLTADTQEL ERHVKIIRDR INELTTKLGC IFPIYIVFTK CDLLYGFSSY FADLTPKERE QVWGSWLGHE KDSNICQAFI RRMETLHHRL CELRLQKLSM VRNMRAKSEL FDFPSQFEAA KDRLVAFISR LTEANPYQDT PHFCGIYLTS ATQEGTPLQK ILGNIRQAFG YVDEDQSSEQ AETKSFFVKD FFKEVVFPNA NDVSRTKKQG ILHRALKTAC IITSLAVITG CFLLLSTTLT MNTLLLKKGT DTSEHLAQEA QTKNNGVNQD FKALTQVLAH YRTLMNYEKH LPLSYTLGIY EGDKQLPAIR SILLNAFKRI FFKPAIKDLE MRLVNYSQVW AAADLQRQDQ IRDPYYKTLK CYLMLSTPKR LEAEFAAPVL QTLIQERLMG FAKGQSLDKD SQRQLSELIH LYLSHMQIDQ NHPDYMETVK LEASLVTDAQ NHLKAIPDAG RLYTQILNKG KLIAPALHLK DMIKGPGRSV LASSFTMPFM FTSKGWHNYV QPEIDNLVHI ACQGDWVTGY LPDSLSDASG TKTDTSANNP LAVQLETEIR ALYFADYVDH WFSLLAEIQL PPFHSLDDAA KKMLLLARND GPIAELLQVV SRNINIGQAK GSLASDGSVQ SASLVQELEN PLHDLRKLTD PGDKMNTSLL INQYLLALTA AQAEIEQMAA AVDVPQQSFQ YASTILGSNG VTSSELYKCW LSTNSLLNGT DVRTRKVAEH LLYKPIAGAW KAIIQQTQSY VQNQWSSTVF LNYQGKIAGK FPFSNNGADA SLNDVADFFR PEDGLIWAFT DDQLKPFLRK ERNRWTEKTW LGTGLAFDKS LLRSLGLASR ITSGMFRRGQ IQPDVHFSIY PIPSQGLRVV RFETNGQQMI YQNEPQEWKR FQWPGDEDQN SAFIGCIPSG NQSMVKIKFS GDWSLFHLLN KAKITQNHNL YTLDWKLKTG QNNDAIVHLK LRPDRHSNVF AQGLFSQFRL PSNIF
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