Gene Pcar_2811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2811 
Symbol 
ID3725516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp3277808 
End bp3281395 
Gene Length3588 bp 
Protein Length1195 aa 
Translation table11 
GC content51% 
IMG OID637752420 
Producthypothetical protein 
Protein accessionYP_358216 
Protein GI77920401 
COG category[S] Function unknown 
COG ID[COG3523] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03348] type VI secretion protein IcmF 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATA TTCTGATTTT CCTTCAGGCT TATCTTTTCG GGCGGCTAGG CTCCCGAATC 
CTTGGGCTGA TGCTAATCCT GTCACTGATC TGGTGGGCCG GCCCCTACGT AGGCATCGAT
GATACCTCGT TGCGTATTTA TCTCATCCTT GGAACCTTAA CTCTGTTTTT CGGCATCTGG
TTGGTACGCA AAAGCATCGC TAAACGGCGT GGCAATCAAT TCAGACAAGA CCTCGACTCT
CAGACAGGCC AGGACCAATC ACGCCAATTG GAAATTGAAG AGCTCAAGGC CAAGATGAAC
CAGGCCGTCG CCTCGTTAAA ATCTTCCGAA CTTGGAAGTC ACCGTCGTGG CAATGCCGCC
TTGTACGCCC TGCCCTGGTT CATGATCATT GGCCCTTCGG CAGCCGGGAA AACCACCTTA
CTGCGCAACT CCGGGCTGCA TTTCCCCTAT GCCAACGGCG AAGACATCGA CATACGAGGC
TTTGGTGGCA CTCGCAATTG CGACTGGTGG TTTTCCAACG AAGCGGTTTT GCTCGATACA
GCCGGACGCT ATACCACGGA GCAGGACGAC CACGAAGAAT GGTTGGCCTT TTTAAGTATG
CTGCGCAAGC ATCGCCGCCA GCAACCTCTG ACTGGCGCTA TTGTCGCCAT CAGCCTATCG
GACCTGCTAA CAGCCGATAC CCAGGAACTG GAGCGTCATG TCAAAATCAT TCGTGATCGC
ATCAATGAAT TAACCACTAA ACTCGGATGT ATTTTCCCTA TTTATATCGT TTTCACCAAA
TGTGATCTTC TCTACGGTTT TTCTTCCTAT TTTGCGGATC TGACTCCCAA GGAGAGGGAA
CAAGTCTGGG GCAGTTGGCT GGGGCACGAA AAGGATAGCA ACATCTGCCA GGCCTTTATC
CGCAGAATGG AAACTCTACA CCATCGCCTA TGCGAGTTGC GGTTGCAGAA ACTCTCCATG
GTCCGGAACA TGCGCGCCAA AAGCGAACTT TTTGATTTCC CCTCCCAGTT CGAGGCTGCT
AAAGATCGTC TTGTCGCATT CATTTCGCGA CTAACTGAAG CAAACCCCTA CCAGGACACC
CCTCACTTTT GCGGCATCTA TCTGACCAGC GCCACCCAGG AAGGTACCCC CCTGCAGAAA
ATCCTTGGCA ATATACGCCA GGCCTTTGGT TATGTGGATG AAGACCAATC CTCAGAACAG
GCAGAAACTA AAAGCTTTTT TGTAAAGGAT TTTTTCAAAG AGGTTGTTTT TCCCAATGCC
AATGATGTCA GTCGAACAAA AAAGCAGGGC ATACTGCACC GCGCTCTGAA AACCGCCTGC
ATCATAACAT CCCTGGCTGT CATCACAGGC TGTTTCCTGC TACTCAGCAC GACTCTGACC
ATGAATACCT TGCTGCTTAA AAAAGGAACC GACACCTCGG AGCATCTGGC GCAGGAAGCG
CAAACGAAAA ACAACGGCGT GAATCAGGAC TTTAAGGCAT TGACACAGGT TCTGGCACAC
TACCGCACCC TTATGAATTA CGAAAAACAC CTGCCGCTGT CTTATACCTT AGGAATCTAC
GAGGGGGACA AACAATTGCC GGCGATCCGC TCTATTCTGC TTAACGCTTT TAAACGGATC
TTTTTCAAAC CGGCAATCAA AGATCTGGAG ATGCGTCTGG TCAACTATTC CCAGGTATGG
GCGGCGGCCG ACCTGCAACG CCAGGATCAA ATCCGCGACC CCTATTACAA AACGCTAAAA
TGCTACCTGA TGCTCAGTAC ACCCAAACGG CTGGAGGCCG AGTTTGCCGC GCCAGTACTG
CAGACCCTTA TCCAGGAACG TTTGATGGGA TTTGCCAAAG GGCAGTCTCT GGATAAGGAC
TCGCAACGAC AGCTGTCCGA ATTGATCCAT CTCTATTTAT CCCACATGCA GATTGACCAA
AACCACCCCG ATTATATGGA GACTGTTAAA CTCGAAGCAT CTCTGGTAAC CGACGCGCAA
AACCACCTCA AAGCCATACC GGATGCCGGC CGCCTTTACA CACAAATCCT CAATAAGGGC
AAATTAATAG CCCCTGCCCT CCACCTCAAG GACATGATCA AAGGGCCAGG ACGAAGTGTT
CTGGCCAGCT CCTTCACCAT GCCTTTCATG TTTACCAGCA AAGGTTGGCA CAATTATGTG
CAGCCTGAAA TCGACAACTT GGTCCATATC GCCTGTCAGG GAGATTGGGT CACCGGTTAT
CTCCCGGATA GTCTGTCCGA TGCCAGCGGT ACGAAAACCG ACACCTCGGC AAATAATCCA
TTGGCGGTTC AACTCGAAAC CGAGATCCGC GCCTTGTACT TTGCGGACTA CGTTGACCAT
TGGTTCAGTC TGCTGGCTGA AATTCAATTG CCACCATTTC ACTCCTTGGA TGACGCTGCA
AAGAAAATGC TGCTGCTGGC CCGCAATGAC GGCCCCATCG CTGAACTGCT GCAAGTCGTC
TCCAGAAATA TCAACATTGG CCAAGCAAAA GGGAGCTTGG CAAGCGACGG CTCAGTGCAA
AGTGCCTCGC TGGTCCAGGA ACTGGAAAAT CCTCTTCATG ACCTGCGGAA ACTGACCGAT
CCCGGCGACA AGATGAATAC CAGCCTGCTC ATCAACCAGT ACCTGCTGGC CTTAACAGCG
GCCCAGGCAG AAATCGAACA AATGGCGGCA GCCGTGGATG TGCCCCAGCA GTCATTTCAA
TACGCGTCGA CCATCCTGGG CAGCAACGGC GTCACCAGTT CCGAGCTGTA CAAATGCTGG
CTATCCACCA ACAGTCTGCT CAACGGTACC GACGTCCGCA CCCGCAAGGT AGCTGAGCAT
TTGCTGTACA AACCGATCGC TGGAGCCTGG AAAGCCATCA TTCAGCAGAC ACAGTCTTAT
GTACAAAACC AATGGAGCAG CACGGTTTTC CTGAATTACC AAGGGAAAAT AGCCGGTAAA
TTCCCCTTTA GTAACAACGG TGCAGATGCC TCGCTTAATG ATGTAGCGGA CTTTTTCCGT
CCCGAAGATG GTCTGATCTG GGCTTTTACA GACGATCAAC TCAAACCCTT TCTGCGTAAA
GAGCGTAATC GGTGGACCGA AAAAACCTGG CTTGGTACCG GTCTCGCTTT TGACAAAAGC
CTGTTACGTT CTTTGGGACT GGCCTCGCGC ATTACCTCTG GGATGTTTCG TCGCGGTCAG
ATTCAACCCG ATGTTCACTT TTCCATCTAT CCGATCCCCA GCCAGGGACT ACGAGTCGTA
CGCTTCGAAA CCAACGGTCA ACAAATGATT TATCAGAACG AACCGCAGGA ATGGAAAAGG
TTCCAATGGC CGGGAGATGA AGACCAGAAC AGCGCGTTCA TCGGCTGCAT CCCAAGCGGC
AATCAATCCA TGGTCAAAAT CAAATTCTCC GGCGACTGGA GTCTTTTTCA CCTGCTAAAC
AAAGCCAAAA TTACGCAAAA CCATAACCTG TACACCTTGG ACTGGAAGCT GAAAACTGGC
CAGAATAACG ACGCCATAGT ACACCTTAAA CTTCGTCCCG ATCGCCACAG CAATGTGTTT
GCCCAAGGAC TGTTCTCGCA GTTTCGACTG CCGAGCAACA TTTTTTAA
 
Protein sequence
MQNILIFLQA YLFGRLGSRI LGLMLILSLI WWAGPYVGID DTSLRIYLIL GTLTLFFGIW 
LVRKSIAKRR GNQFRQDLDS QTGQDQSRQL EIEELKAKMN QAVASLKSSE LGSHRRGNAA
LYALPWFMII GPSAAGKTTL LRNSGLHFPY ANGEDIDIRG FGGTRNCDWW FSNEAVLLDT
AGRYTTEQDD HEEWLAFLSM LRKHRRQQPL TGAIVAISLS DLLTADTQEL ERHVKIIRDR
INELTTKLGC IFPIYIVFTK CDLLYGFSSY FADLTPKERE QVWGSWLGHE KDSNICQAFI
RRMETLHHRL CELRLQKLSM VRNMRAKSEL FDFPSQFEAA KDRLVAFISR LTEANPYQDT
PHFCGIYLTS ATQEGTPLQK ILGNIRQAFG YVDEDQSSEQ AETKSFFVKD FFKEVVFPNA
NDVSRTKKQG ILHRALKTAC IITSLAVITG CFLLLSTTLT MNTLLLKKGT DTSEHLAQEA
QTKNNGVNQD FKALTQVLAH YRTLMNYEKH LPLSYTLGIY EGDKQLPAIR SILLNAFKRI
FFKPAIKDLE MRLVNYSQVW AAADLQRQDQ IRDPYYKTLK CYLMLSTPKR LEAEFAAPVL
QTLIQERLMG FAKGQSLDKD SQRQLSELIH LYLSHMQIDQ NHPDYMETVK LEASLVTDAQ
NHLKAIPDAG RLYTQILNKG KLIAPALHLK DMIKGPGRSV LASSFTMPFM FTSKGWHNYV
QPEIDNLVHI ACQGDWVTGY LPDSLSDASG TKTDTSANNP LAVQLETEIR ALYFADYVDH
WFSLLAEIQL PPFHSLDDAA KKMLLLARND GPIAELLQVV SRNINIGQAK GSLASDGSVQ
SASLVQELEN PLHDLRKLTD PGDKMNTSLL INQYLLALTA AQAEIEQMAA AVDVPQQSFQ
YASTILGSNG VTSSELYKCW LSTNSLLNGT DVRTRKVAEH LLYKPIAGAW KAIIQQTQSY
VQNQWSSTVF LNYQGKIAGK FPFSNNGADA SLNDVADFFR PEDGLIWAFT DDQLKPFLRK
ERNRWTEKTW LGTGLAFDKS LLRSLGLASR ITSGMFRRGQ IQPDVHFSIY PIPSQGLRVV
RFETNGQQMI YQNEPQEWKR FQWPGDEDQN SAFIGCIPSG NQSMVKIKFS GDWSLFHLLN
KAKITQNHNL YTLDWKLKTG QNNDAIVHLK LRPDRHSNVF AQGLFSQFRL PSNIF