Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_2382 |
Symbol | rpoH |
ID | 3725084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 2806039 |
End bp | 2806899 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637751993 |
Product | RNA polymerase, sigma (32) factor |
Protein accession | YP_357791 |
Protein GI | 77919976 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 3.21763e-19 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAACT TGCCGCTACC TGTTTCTTCG GACAACCTGT CGCTTTACAT TGCCCAGATC CGAGCCTTTG AGTTGCTGAC CAAGGAAGAA GAATTTCGCC TTACCCAGGA CTACCATCGC AACCAGAACA TTGAAGCCGC CCAGCAGCTG ATCTGCGCCA ACCTGCGATT CGTCGTCAAA ATCGCACACG AATACAGGGG CTACGGACTG AAACTTCTGG ATATCATCCA GGAGGGCAAC ATCGGCCTTA TGAAAGCGGT TAAAAAGTTC GACCCGGATC GCGGGCTACG TTTCATAACC TACGCCGTAT GGTGGATTCG CGCTTACATC CATAATTTCA TCATTCGCAA CTGGTCTCTG GTCAAGATCG GCACCACCCA GGCCCAGAAA AAACTTTTCT TCAAACTCAA CCAGGTACGC AGCGCCATAC AGCGCATGAC CGGAAGCGAG GATACCAAGG CCATCGCCCG GGAACTCAAC GTGCGTGACG ATGAGGTAGA AGATATGGCA CGCCGCATGG CCGGACGTGA TACGTCTCTG GACATGAGGC TTGTCGAGGG CGAAGATTTT ACCCTGCTCG ATTCGCTGGC CGACGAGCGA GAGAGCCAGG AGGAGTTACT CATCAAACAG CAGGAGAAGC AGATAACGAC CTCTCATATT CACGGCGCTC TGCAAGAGTT GAACGATCGG GAACGCCGCA TTGTGGAGGA ACGTATCCTT CAGGAAGAGC CGCGGACCTT GCAGGCACTG GCGGACGATT TCGGCATCAG CAGAGAACGG GTTCGCCAAC TGGAAAAGAA TGCGCTGGAG AAAATTCGAA AGACCCTCAC CGCCAACGCG CCCTGCCTGC TGACCCACTG A
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Protein sequence | MNNLPLPVSS DNLSLYIAQI RAFELLTKEE EFRLTQDYHR NQNIEAAQQL ICANLRFVVK IAHEYRGYGL KLLDIIQEGN IGLMKAVKKF DPDRGLRFIT YAVWWIRAYI HNFIIRNWSL VKIGTTQAQK KLFFKLNQVR SAIQRMTGSE DTKAIARELN VRDDEVEDMA RRMAGRDTSL DMRLVEGEDF TLLDSLADER ESQEELLIKQ QEKQITTSHI HGALQELNDR ERRIVEERIL QEEPRTLQAL ADDFGISRER VRQLEKNALE KIRKTLTANA PCLLTH
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