Gene Pcar_2382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2382 
SymbolrpoH 
ID3725084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp2806039 
End bp2806899 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content54% 
IMG OID637751993 
ProductRNA polymerase, sigma (32) factor 
Protein accessionYP_357791 
Protein GI77919976 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.21763e-19 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAACT TGCCGCTACC TGTTTCTTCG GACAACCTGT CGCTTTACAT TGCCCAGATC 
CGAGCCTTTG AGTTGCTGAC CAAGGAAGAA GAATTTCGCC TTACCCAGGA CTACCATCGC
AACCAGAACA TTGAAGCCGC CCAGCAGCTG ATCTGCGCCA ACCTGCGATT CGTCGTCAAA
ATCGCACACG AATACAGGGG CTACGGACTG AAACTTCTGG ATATCATCCA GGAGGGCAAC
ATCGGCCTTA TGAAAGCGGT TAAAAAGTTC GACCCGGATC GCGGGCTACG TTTCATAACC
TACGCCGTAT GGTGGATTCG CGCTTACATC CATAATTTCA TCATTCGCAA CTGGTCTCTG
GTCAAGATCG GCACCACCCA GGCCCAGAAA AAACTTTTCT TCAAACTCAA CCAGGTACGC
AGCGCCATAC AGCGCATGAC CGGAAGCGAG GATACCAAGG CCATCGCCCG GGAACTCAAC
GTGCGTGACG ATGAGGTAGA AGATATGGCA CGCCGCATGG CCGGACGTGA TACGTCTCTG
GACATGAGGC TTGTCGAGGG CGAAGATTTT ACCCTGCTCG ATTCGCTGGC CGACGAGCGA
GAGAGCCAGG AGGAGTTACT CATCAAACAG CAGGAGAAGC AGATAACGAC CTCTCATATT
CACGGCGCTC TGCAAGAGTT GAACGATCGG GAACGCCGCA TTGTGGAGGA ACGTATCCTT
CAGGAAGAGC CGCGGACCTT GCAGGCACTG GCGGACGATT TCGGCATCAG CAGAGAACGG
GTTCGCCAAC TGGAAAAGAA TGCGCTGGAG AAAATTCGAA AGACCCTCAC CGCCAACGCG
CCCTGCCTGC TGACCCACTG A
 
Protein sequence
MNNLPLPVSS DNLSLYIAQI RAFELLTKEE EFRLTQDYHR NQNIEAAQQL ICANLRFVVK 
IAHEYRGYGL KLLDIIQEGN IGLMKAVKKF DPDRGLRFIT YAVWWIRAYI HNFIIRNWSL
VKIGTTQAQK KLFFKLNQVR SAIQRMTGSE DTKAIARELN VRDDEVEDMA RRMAGRDTSL
DMRLVEGEDF TLLDSLADER ESQEELLIKQ QEKQITTSHI HGALQELNDR ERRIVEERIL
QEEPRTLQAL ADDFGISRER VRQLEKNALE KIRKTLTANA PCLLTH