Gene Pcar_2039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2039 
Symbolrne 
ID3724730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp2370354 
End bp2373134 
Gene Length2781 bp 
Protein Length926 aa 
Translation table11 
GC content57% 
IMG OID637751641 
Productribonuclease E 
Protein accessionYP_357450 
Protein GI77919635 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000375144 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAAA AAATGCTCAT CAATGCCACC CATCCGGAGG AGCATCGGGT TGCTATTGTC 
GAAGACGGAA TTCTGTCAGA ACTCGATATC GAAATTTCCG GCAAGGAGCA AACCAAAGGC
AATATTTACA AGGCCGTTGT AGCCCGCGTC GAAACGGGAT TGCAAGCGGC CTTTGTCGAT
TATGGAAGCG AACGTCTCGG GTTTCTTCAG ATCGGCGAAA TACACCCGGC TTTTTTCAAG
GAAGCCGAAG GACGGGTGGA GGCCGGCAAA CGCCCACGCA TCAACGATAT CCTGCGGCGC
GGCCAGGAAA TCCTGGTACA GATCGTTAAA GAGGAACGCG GCACCAAGGG AGCCGCCCTG
ACGACCTACC TTTCGCTACC CGGCCGTTAC ATGGTCCTGA TGCCCGATTC GGACACCAAA
GGCATATCGC GCAAAATCGA AAAAGAATCC GACCGCAAAA AGCTCAGGGA ACTCATGGAC
AGCCTCGAGA TCCCCGAGGA AATGGGCTAC ATTGTCCGAA CCGCCGGCAG CACGCAGAAA
AGAACCGACC TCAAACGCGA TGTCGACTAT CTGCTGCGCC TTTTCAATAA AATCCAATCC
CTTTCCGACA GCACCAAGGC ACCGTCCCTG ATCTATAAGG AATCCAATCT GGTCATTCGC
TCCATTCGCG ACTATTTCAG CGACGATATG GATGAAGTGC TGGTAGACGA CGCCAAGGTC
TCCACCGAAG CACGGGACTT CTTCCAGGAA GTGATGCCCG AATATGCCGA ACTGGTAAAA
CTGCACCAGG AGCGGCGGCC GATTTTCGCC CGCTACCAGA TCGAAGATCA GATCGAATCC
ATCGGTAAAA ACAAAGTCAT GCTCCCTTCC GGCGGGTCCA TAGTCATCGA CTCCACCGAA
GCGTTGGTGG CCATCGATGT CAACTCCGGC AAAATGGCCA GCGAGCAAGG CGTGGAAGCC
ACGGCCTACA AGACCAACCT TGAGGCCGCG GTCGAAACCG CCCGGCAATT GCGACTACGC
GACCTAGGCG GGCTGGTTGT TATCGACTTC ATCGATATGC GTGACCGAAA GCATATACGC
GATATTGAAA AAACCCTCAA AGAGGCCATG AAAACCGATA AGGCCAGAGT CACTATCGGG
CGCATCAGCC AATTCGGCCT GCTGGAAATG AGTCGCCAAC GCATCAAGTC CGCCCTTGCC
GCCGCCTCCT TCGAGGTCTG CCCGCATTGC AATGGCAGCG GCAAAATCAA GACGATAGAA
GCCCAGTCCC TGGGATTTTT GCGCCGCATT CACACCGGCC TCGCAAAAGG CCGTATCGGA
CGGGTGGAAG CCACGGTGCC CCTGGATGTC GCCAGCTATC TGCTCAATAA CAAACGCGTC
GAATTGATGG CTATCGAGCA GAAAAACGAC GTCAGCATTC ACATCAAAGG CTGCCCGGAT
TACATGAACG GCCAAGGCGA AATCGACTTC CATAAACGGG AGAAGGAAGA GACCCAGGCC
ACCGCCTATA TTGAAGCCAG CCAGGTCATG TCCGAAACCA ACAATGCGCA GCAGGATTCC
ACTACGGACA CCGAGGAAAA ACCTGCGAAA CGCAGACGCC GCCCCCGCAG ACGACGCAAA
TCGTCTGCCG CAACTCCCGT ATCGGAGCCC TCTACCCTGA CAACAGAATC AGAGGAGCAA
CAACCGGCTG CAACCCAGGA CGCTGCAGAA TCGCAACCGA TGGCAACAGA TACGGAAGTC
GCTCGGGAAG TCAGCGAAAA AACCGCTGAA CCGGTATCAA CCGAAGCGAC AGAGCCCGCT
GAAAAAACAG CCGAGCCGGC ATCGGCCGCG GAGGAGCAAC CGCAGAAACC GTCCCGACCG
CGCAGCCGCT CCGGCCGCCG CAAACCCGCT ACAAAAAAAA CCGAGGCCAA ACCTGAGGCC
AAACCTGAGG CCAAACCTGA GGCCAAACCG GAAGCCAAAC CGGAAGCCAA ACCGGAAGCC
AAACCGGAAG CCAAACCGGA AGCCAAACCG GAAGCCAAAC CGGAAGCCAA GCCGGAAGCC
AAACCGGAAG CCAAACCGGA AGCCAAACCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAGCCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAACCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAGCCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGAAAGCC
AAACCGAAGG TCGAGTCGGA AGCCCAGTCA GAGGCTATGC CGGAAGCCAA GCCGAAAACA
ACCCGGCGCG CTCCGAGCAG AAGTCGGACC AAAACCAAAA CAAAAACCGA AACTGCGGAA
AGCAACACTT CGGCGACGGG TACCGAGACG GACACACCTT CTGAAAAGGA TGAAAAACCC
GCGGAAACCA AGCCGCCTGC AAAGCGTGCC CGAGCACGGC GTACCACCAA ACCGACGGCA
AAAACAGCGA CACAGGCCAG CGATGATGTT TCGCCCGCTG AAAAGGATGA AACCGCCAAA
GCAACTGAAA CTGCCGCACC GAAACGTCGG ACAAGGGCCA GAAAAACAAC AGCCAAAACC
GTAAAATCCG GCGACGACGC CAGCTCCGTA TCTGCCAGCA ATGCGGAGGA AGCTGAAAAG
AAAAAACCGA CCCGCCGGCC CCGTAAGCCG GCAGCGAAAG CGGTTGAAGA ATCCAAAAAG
GCTGAAACGT CCGAGGATTA A
 
Protein sequence
MTKKMLINAT HPEEHRVAIV EDGILSELDI EISGKEQTKG NIYKAVVARV ETGLQAAFVD 
YGSERLGFLQ IGEIHPAFFK EAEGRVEAGK RPRINDILRR GQEILVQIVK EERGTKGAAL
TTYLSLPGRY MVLMPDSDTK GISRKIEKES DRKKLRELMD SLEIPEEMGY IVRTAGSTQK
RTDLKRDVDY LLRLFNKIQS LSDSTKAPSL IYKESNLVIR SIRDYFSDDM DEVLVDDAKV
STEARDFFQE VMPEYAELVK LHQERRPIFA RYQIEDQIES IGKNKVMLPS GGSIVIDSTE
ALVAIDVNSG KMASEQGVEA TAYKTNLEAA VETARQLRLR DLGGLVVIDF IDMRDRKHIR
DIEKTLKEAM KTDKARVTIG RISQFGLLEM SRQRIKSALA AASFEVCPHC NGSGKIKTIE
AQSLGFLRRI HTGLAKGRIG RVEATVPLDV ASYLLNNKRV ELMAIEQKND VSIHIKGCPD
YMNGQGEIDF HKREKEETQA TAYIEASQVM SETNNAQQDS TTDTEEKPAK RRRRPRRRRK
SSAATPVSEP STLTTESEEQ QPAATQDAAE SQPMATDTEV AREVSEKTAE PVSTEATEPA
EKTAEPASAA EEQPQKPSRP RSRSGRRKPA TKKTEAKPEA KPEAKPEAKP EAKPEAKPEA
KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPEA
KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPKA KPKVESEAQS EAMPEAKPKT
TRRAPSRSRT KTKTKTETAE SNTSATGTET DTPSEKDEKP AETKPPAKRA RARRTTKPTA
KTATQASDDV SPAEKDETAK ATETAAPKRR TRARKTTAKT VKSGDDASSV SASNAEEAEK
KKPTRRPRKP AAKAVEESKK AETSED