| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1983 |
|---|
| Symbol | ispB |
|---|
| ID | 3724653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2309601 |
|---|
| End bp | 2310569 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637751584 |
|---|
| Product | octaprenyl diphosphate synthase |
|---|
| Protein accession | YP_357394 |
|---|
| Protein GI | 77919579 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 0.977315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTTG CCCAGACACT GCTTAAAGAA GATCTGCAAC ATATCGAAAG CTGTTTCCGT
CAGTATCTGA CATCCGATGT GCCTTTGATC CGTCAGATGA GCGACTATAT CCTTGCTAGC
GGAGGTAAAC GCATCCGTCC GGTTCTGTTG CTTCTTTGTG CGCGTTTAAG CGGCTACAAC
GGAGAACATC GGTATCCTCT GGCGAGCGTC ATTGAATTCA TTCATACCGC GACCTTATTG
CATGACGACG TCGTCGATGG TGCAACCTTG CGACGGGGGC AGGTGGCTGC CAACGTCACC
TGGGGCAACG ACATCGCCGT GCTGGTCGGC GACTATCTGT TCGCCCGATG TTTTGAAATG
ATGGTCGATT TCTGCGATCG ACGTATCATG CAGGTTCTGG CCAATACCAC TTCGCTAATG
GCGCAGGGCG AGGTGGTTCA ACTCATCAAC AGCGGTGATC TGTCTCTTGA CGAAGAGCGT
TACTTGTCGG TGGTGCGCAG CAAAACGGCC GCTTTGTTTT CCGCTACCTG TCGTTGCGCA
GCCATTCTCG GTCAACTGTC CGCTGAAAAG GAAGAGGATC TTGCCGGATT CGGCATGCAT
CTCGGGGTGG CTTTTCAACT GGTGGACGAT GCTCTTGACT ATGTTGCGGA TCAGAACGAA
TCGGGTAAAC TGCTGGGTCG CGATCTGGCG GAAGGAAAAA TGACTCTGCC TCTGATTCAT
TCCTTACGCC ATTGTCAGGG CGAGGAAAGG CAGCAGGTTT CGGGAATTCT GGCCAAGGGA
CAGCTGCATG CCGAAGATCT GGCCTTCGTT CAAAATCTTA TAAATCGTTA CGATGGTATC
GGGTATACCC AGAGACAGGC TGATTCTTAT GTGAAGCAGG CCTGTTTGCG CCTGCAGGGT
TTTCCCGATT CGCCTGCGCG CCAGGCTCTT GTCGAGTTGG CGGAATCCGC CGTCCACCGT
CGGTCCTGA
|
|---|
| Protein sequence | MQLAQTLLKE DLQHIESCFR QYLTSDVPLI RQMSDYILAS GGKRIRPVLL LLCARLSGYN
GEHRYPLASV IEFIHTATLL HDDVVDGATL RRGQVAANVT WGNDIAVLVG DYLFARCFEM
MVDFCDRRIM QVLANTTSLM AQGEVVQLIN SGDLSLDEER YLSVVRSKTA ALFSATCRCA
AILGQLSAEK EEDLAGFGMH LGVAFQLVDD ALDYVADQNE SGKLLGRDLA EGKMTLPLIH
SLRHCQGEER QQVSGILAKG QLHAEDLAFV QNLINRYDGI GYTQRQADSY VKQACLRLQG
FPDSPARQAL VELAESAVHR RS
|
|---|
| |