| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1938 |
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| Symbol | rpoN |
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| ID | 3724628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 2252466 |
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| End bp | 2253923 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637751539 |
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| Product | RNA polymerase, sigma 54/sigma 60 factor |
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| Protein accession | YP_357349 |
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| Protein GI | 77919534 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTAG AAATTCGGCA ACAGCTCAAA TTAAGTCAAC AGCTTGTCAT GACGCCGCAG
TTGCAGCAGG CCATCAAGTT GTTGCAGCTT TCGCGTTTGG AGTTGGAGGC GGTGGTCCGC
CAGGAACTGG AAGAAAATCC TGTCTTGGAA GAAGGACTCG ATCCCGCCGA AGACAAGGAG
TTGGCCGCTG AAGTTGCCGA AATTGCCGAA ACGCCTGAGC CTGAAACCAA GACCGAAGAG
GTCAAGGAAC TGCAGGGCGA TATGGAGGAG TTTAACCAGG CCGATTGGCA GAACTACCTC
GATGGCTACA ATGCCAGTGG GGCAACCGCC GATACGTATG AAGCCGATGA GGAACGTCCC
AGCTTTGAAA GCCTGCTGAC CAAGAAAACC TCTCTTGCCG ATCACCTCCT GTGGCAACTT
CACTTGTCCC GTATCCCTGA TGATCAGCGT GCCGCTGCCG GTGAGATCAT CGGCAATATC
GATGAGGACG GTTATTTTAA GTCGACCATC GAGGAAATTG CAACCGCCGT AGGCGTCAGT
CCGGATGCCG CCGAAAACGC CCTGGCTGTG GTGCAGGATT TCGATCCTCC CGGGGTTGCC
ACGCATAATC TACGCGATTG CCTGCTTAAA CAGGCCGAGG TGCTGGGTAT GGGAGAATCC
CTGGTCGGTA CCATCTTGAG AGATCACATC GCGGAGCTGG AAAATCGTAA ATACCAGGTC
ATAGCCAGAA CTCTTGGCGT GCCGCTGGAT GACGTCCTTG GTGCCGCCCG GGTTATCTCC
GGACTCGACC CGCGGCCCGG CAGGGCTTAC AGCCAGGACG AAATTCAATA TATAACCCCG
GATATTTTCG TACACAAGGT CGGCGACGAA TACGTTGTGG TACTTAACGA CGAGGGGTTG
CCCAATTTGC GCATCAATTC CTTTTATCGC AATGCCATGT CCGGGGAAAA GAAGGTCGAC
GAGGCCGCCG GCGAATACAT CCAGGACAAA TTACGCGGTG CGCTGTGGCT GATTAAAAGC
ATCCATCAGC GGCAACGCAC TATTTTTCGT GTCACCAAGA GTATTGTGAA GTTCCAGCGC
GATTTTTTTG AAAAGGGTAT TGAACATCTC AAGCCTTTGG TCCTACGCGA TGTTGCCGAA
GATATCGAAA TGCACGAGTC GACGGTGAGT CGCGTGACAA CCAACAAATA CGTGCAGACT
CCGCGTGGAT TGTTTGAGTT GAAGTATTTT TTCAACAGCG GTATAAATAC GACAGTAGGG
GAATCGATAG CGTCCGAAAG CGTGAAAAGC AAGATCAAGG ATATTATCGC AGACGAAAAT
CCCAAAAAGC CCTATTCGGA TCAGAAGATT GTCGATATTC TTCGTCAGGA GGGGATCGAC
ATCGCCCGTC GTACCGTGAC GAAGTATCGG GAAATGTTGA ATATTCGATC ATCTACCGAG
CGTAAGCGAT TGTTTTGA
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| Protein sequence | MALEIRQQLK LSQQLVMTPQ LQQAIKLLQL SRLELEAVVR QELEENPVLE EGLDPAEDKE
LAAEVAEIAE TPEPETKTEE VKELQGDMEE FNQADWQNYL DGYNASGATA DTYEADEERP
SFESLLTKKT SLADHLLWQL HLSRIPDDQR AAAGEIIGNI DEDGYFKSTI EEIATAVGVS
PDAAENALAV VQDFDPPGVA THNLRDCLLK QAEVLGMGES LVGTILRDHI AELENRKYQV
IARTLGVPLD DVLGAARVIS GLDPRPGRAY SQDEIQYITP DIFVHKVGDE YVVVLNDEGL
PNLRINSFYR NAMSGEKKVD EAAGEYIQDK LRGALWLIKS IHQRQRTIFR VTKSIVKFQR
DFFEKGIEHL KPLVLRDVAE DIEMHESTVS RVTTNKYVQT PRGLFELKYF FNSGINTTVG
ESIASESVKS KIKDIIADEN PKKPYSDQKI VDILRQEGID IARRTVTKYR EMLNIRSSTE
RKRLF
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