Gene Pcar_1617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_1617 
Symbol 
ID3724317 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp1890455 
End bp1891114 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content51% 
IMG OID637751212 
Productsignal peptidase I 
Protein accessionYP_357031 
Protein GI77919216 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0681] Signal peptidase I 
TIGRFAM ID[TIGR02227] signal peptidase I, bacterial type 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.00286894 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAATC GCACCTCGTC CGGCACAGCA CTCAATAAAA ATTCCGGAAA GCCGTGGTAT 
CGTGAGTGGG GCGAAGCGAT CGGCGTTGCC TTGATTTTGG CGCTGATCAT ACGAACCTTC 
TTGTTTCAGG CTTTTAAAAT CCCGTCGGGA TCGATGGAAG ACACCTTGCT TATCGGTGAT 
CATCTGCTTG TTAACAAATT TATTTATGGA TTACAGGTGC CGTGGTCCGA GGAGAGGTTT 
CTAAGTCTAC GCAACCCGCA ACGCGGAGAT GTTATCGTTT TTGAATTCCC GCTGGATGAA 
GACCTCCCTT TTTATAAGCG CAGGGACTTC ATCAAACGGG TTATCGGCGT CCCCGGAGAC 
ACTGTTGAGG TGCGCAGCAA GGTGGTGTAT ATCAATGGCG AAGCGTTGAA CATTCCCCAG 
GCCGTTCATA AAGGTCCCTT CTTTGCCGAG GATCCGCGCC GCGACAATCT CGCGCCACAA 
CAGGTTCCCG GCGGACAGTA TTTTGTCATG GGCGACAACC GAGACCGATC ATACGACAGC 
CGCTTCTGGG GTTTTGTCGA AAAATCCGAG ATAAAAGGGC TGGCGTTCAT TAAATACTGG 
TCCTGGGACA GCAAAAAACA CAGCCCTCGC TGGAATCGCA TGGGGCGGTT GATCAAATAA
 
Protein sequence
MSNRTSSGTA LNKNSGKPWY REWGEAIGVA LILALIIRTF LFQAFKIPSG SMEDTLLIGD 
HLLVNKFIYG LQVPWSEERF LSLRNPQRGD VIVFEFPLDE DLPFYKRRDF IKRVIGVPGD 
TVEVRSKVVY INGEALNIPQ AVHKGPFFAE DPRRDNLAPQ QVPGGQYFVM GDNRDRSYDS 
RFWGFVEKSE IKGLAFIKYW SWDSKKHSPR WNRMGRLIK