Gene Pcar_1513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_1513 
SymbolxerD 
ID3723777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp1771571 
End bp1772458 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content55% 
IMG OID637751109 
Productsite-specific recombinase 
Protein accessionYP_356929 
Protein GI77919114 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value0.110584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAAT ATCTCGACCT TTTTCTTAAT TATCTGGTGG TCGAAAAAGG CCTCTCCGCC 
AATACCCTGG ATGCCTACGG GCGCGACCTT GCCCGATATC TGGAATTTCT CTCTGTCAAG
GGGGTAACAG GCTTGGAGCA GGTCAGCCCG CCCATGGTGG TGGCCTTTTT GTCGGCTCTC
AAGGAACGGG GGCTGTCGGC TCGCAGTCGC GCCCGCAAAC TGGTTTCGTT GCGTATGTTT
CATCGTTTTT TGCTGGCCGA GAATCTGGCA ACGACCAATC CCGCTGCGCA GGTGGCGGCA
CCCAAAAGCT TTGCCAAGTT ACCGCAAATA TTGACGCCTG ACGAGGTTGA AAGCCTTCTC
AGCGCCCCTG GCAATACCAC CTGTTTTGAT TTGCGTGACA AGGCCATGCT GGAAATTCTC
TATGCCACAG GCCTGCGGGT GTCGGAACTG GTAGGACTTA CCTTGCAGGA TTTACAGCTC
GATGTCGGTT ATCTCACGGC CTTCGGCAAG CGCGCCAAGC AGCGTATCGT GCCTTTGGGA
GATGCCGCCA GAGAGGCTGT TCTTGAGTAT TTATCCCATG GCCGTGGCGA GTTGGCGGGC
GAGGTCGGTT CGGGGTTTTT GTTTTTGAAT CGTTCAGGTA ACGGGTTGAC ACGACAGGGG
TTCTGGAAGA TGATGAAGCG CAGAGCGATG GAGGCGGGCA TCAATAAAAA TATTACGCCT
CACACTTTGC GACATTCATT TGCTACCCAC CTGCTGGATA ACGGCGCCGA CCTGCGTGCC
GTCCAGGCGA TGCTGGGGCA TGCGGATATT TCCACCACCC AGATTTATAC CCATGTAACC
AGAGAGCGAA TGAAGGTTAT TCACCAACAG CATCACCCGC GTGGGTGA
 
Protein sequence
MDQYLDLFLN YLVVEKGLSA NTLDAYGRDL ARYLEFLSVK GVTGLEQVSP PMVVAFLSAL 
KERGLSARSR ARKLVSLRMF HRFLLAENLA TTNPAAQVAA PKSFAKLPQI LTPDEVESLL
SAPGNTTCFD LRDKAMLEIL YATGLRVSEL VGLTLQDLQL DVGYLTAFGK RAKQRIVPLG
DAAREAVLEY LSHGRGELAG EVGSGFLFLN RSGNGLTRQG FWKMMKRRAM EAGINKNITP
HTLRHSFATH LLDNGADLRA VQAMLGHADI STTQIYTHVT RERMKVIHQQ HHPRG