| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1499 |
|---|
| Symbol | |
|---|
| ID | 3723763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 1754086 |
|---|
| End bp | 1754598 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637751095 |
|---|
| Product | Mut/nudix family protein, putative isopentenyl-diphosphate isomerase |
|---|
| Protein accession | YP_356915 |
|---|
| Protein GI | 77919100 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
|---|
| TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 9.38166e-16 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG GGATGGCTGG CGAGGAGTGG TTTGATATCG TCGATGACGA CGATCGGATT
GTCGGTCGGG CAACCCGAGC CGACTGTCAC GGCAATCCCG GCCTGATACA TCGCGTTGCG
CATGTTTTGG TTTTGAACCG CAAAGAGCAG ATTCTTCTGC AAAAACGGTC CATGTCGAAA
GATGTGCAAC CGGGGCGCTG GGATACCAGT GTCGGAGGGC ATCTTGATCC GGGCGAGTCT
TATCTCGACG CCGCCTTGAG GGAGATGCGG GAAGAGCTGG GGATTGTCGA CGTGCCTCTT
CAGTTTCTCT ATCATTCGCG TATCCGGAAC CATTTTGAAT CAGAGAATGT CGCCACATAT
TTGACGCGTT ACAATGGTGA AATTCGTTTC GATCCTAGCG AAATTGATGC GGTTCGTTTT
TTCTCCGCTG AGGACATTGT CAGCAGGCTC GGCACGGGAT ATTTTACGCC TAATTTCGAA
GAAGAGTGGC AAATGTATAG CAAATGGTGT TAG
|
|---|
| Protein sequence | MIEGMAGEEW FDIVDDDDRI VGRATRADCH GNPGLIHRVA HVLVLNRKEQ ILLQKRSMSK
DVQPGRWDTS VGGHLDPGES YLDAALREMR EELGIVDVPL QFLYHSRIRN HFESENVATY
LTRYNGEIRF DPSEIDAVRF FSAEDIVSRL GTGYFTPNFE EEWQMYSKWC
|
|---|
| |