Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1403 |
Symbol | rnc |
ID | 3723041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 1648653 |
End bp | 1649351 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637750994 |
Product | RNase III |
Protein accession | YP_356819 |
Protein GI | 77919004 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0000749592 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTCGAAG CTAAAAGTGC CGCGTTGTTG GAAGATACCA TTGATTATGT GTTTGATAAC CAGGCTCTTT TGCTGGAAGC TTTGACACAT AAATCTTTCA GCAACGAACA GAACGACCGG ACCGAGCCTG ACAACGAAAG ACTCGAATTC CTCGGTGACG CGGTGTTGGG GGTGGTTGTC AGCCACTACA TTTTCCGTAC TTTTCCCCAC CTGCCCGAAG GAGAATTAAC CCGTATTCGC TCAGAAGTCG TCAGCGAAAA AGGTCTGACG GTTATCGGTA AAGCGATCTG TCTGGGTGAT TATATGCGTC TCGGCAAAGG GGAAGAGCGC AGCGGCGGTC GGCAAAAAAG CAGCTTGCTG GCCAATACCA TGGAAGCATT GCTTGGTGCT GTTTTTTGTG ACGGCGGTTT TGACAGTGTT CGGCGGGTCA TCGAGGCCTT GTTCATTCCC CATATTCAGC GTGCCGCACG TCGCAAGACA GGTGTGGATT ACAAAACCCG CTTGCAGGAA CGCCTGCAGG CAAGGTTCGG AGATGTCCCC CAGTACGTTC TGATTCATGC GGACGGGCCG CCCCATCAGC GTTCCTACTC GGTCGAGGCG CATTTCCGGG GTTCCTGTAT CGGCCAGGGG CAGGGGCGCA GTAAAAAGTC CGCTGAACAG GCAGCAGCCA AACAGGCGTT GGAGTATCTG GAAGAGTGA
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Protein sequence | MLEAKSAALL EDTIDYVFDN QALLLEALTH KSFSNEQNDR TEPDNERLEF LGDAVLGVVV SHYIFRTFPH LPEGELTRIR SEVVSEKGLT VIGKAICLGD YMRLGKGEER SGGRQKSSLL ANTMEALLGA VFCDGGFDSV RRVIEALFIP HIQRAARRKT GVDYKTRLQE RLQARFGDVP QYVLIHADGP PHQRSYSVEA HFRGSCIGQG QGRSKKSAEQ AAAKQALEYL EE
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