Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1259 |
Symbol | msbA |
ID | 3723639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 1479116 |
End bp | 1480855 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637750848 |
Product | ATP-binding transport protein; multicopy suppressor of HtrB |
Protein accession | YP_356678 |
Protein GI | 77918863 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAATACA ATCCTAAACA ACTTTATCAG CGCCTTTGGC GCTATTCCAA GCCTTATCTG CCCCGGGTGT TTCTGGCGAT GTTCGCATCT ATCGTGGTTT CCGGCGTGGA TGTGGCAACC GCCAAGTTGG TGAAGCCCTT TGTCGATGAT GTGCTGATGG CGGCCGACAG AGGTCTGGCC AATCTGGTAC CGATCATCGT GATTGGTCTG GCTGTTTGCA AGGGAGGCGG GCGTTATATC CAGGAATATT TTATCAAGAC TGCCGGTCAG ATGGTGGTGC AGGATATCCG TAATGATCTC TATCGACATT CCATGAATCT CTCCATGGGA TACTTTTCGC GCAGTTCCAC GGGCAACGTG ATGTCTCGCA TCCTTAACGA TGTCGGTGCC CTGCAGAGAT CAGCCGCGGA TGTCATGGTC GATGGCCTGC GGGAGAGTTT TACCCTTATG GGGCTGACTT TCGTGGCTTT TCAGAGCGAT TGGCGTTTGG CCACCATTGC ATTTCTGGTG ATGCCTGTAT CCATTGTTCC CGCAAGTGTC ATCGGCAGAC GTATCAAAGA AAACACCCGG CGGGGCCAAC GCACCATGGG TACCTTGACC CGGGTTCTGC AGGAGAGTCT TGCCGGCATC AAAGTCATCA AGGCCTTTGG CTCCGAAGAT CGGGAATGTC AGCGGTTCAG AACCGAGAAC AAACGTTTCT ATCATTTTAT CCGTAAGGTT CTGAAGTACG ATTCGGCGGC CACCCCAGTG ATCGAGATCC TCTCGTCCTT CGGCATCGGC GCCGTTCTTT GGTACGGTAT CCGCCGGGTC AGCGACGGAG CCATGACGCA GGGGGATTTG TCGGCGTTTA TCGCCGCATT GTTCATGATG TATGCCCCCA TGAAGCGTTT GACCAAGGTA AGCAATACCA TCCAGCGGTC ACTCGGTGCC GCGGAGCGGG TCTTTGAACT CATGGATGAA GTTCCCGAAA TTGCCGATCA GCCCGATGCC ATACAGGCGC CAAGAGCTGT CGGGAATATC GTTTTTGAGC ATGTGGGTTT CTCGTATGGT GATGAGCCGG TGCTGCATGA TCTTAATCTG TCGATTCGGG CCGGGGAAAT TGCGGCCCTG GTCGGTCCGA GCGGCGGCGG TAAATCGACC GTTATCGGCC TTCTGAACCG TTTTTACGAC CCGCAACAGG GTGCCATTCA TATCGATGGG TACGATATCC GTCAATTGAC CCAGGATAGC CTCAAACAGA GCATGGCCCT GGTCGATCAG GAAACCTTTT TGTTTAACGA TACGGTGTGG AATAATATCC GTTACGGTCG TCCCGAAGCC AGCGATTCCG AAGTCGAAGA GGCTGCCAGG CAGGCTTATG CGGACGAGTT CGTGCGTGCC ATGCCCGATG GGTATGAAAC GGTTATCGGC GACCGGGGCG TCCGCCTGTC CGGCGGCCAG CGCCAGCGCA TCTGCATTGC ACGCGCCATT TTGCGCGATG CGCCGATTCT ACTGCTTGAC GAGGCGACCA GTGCCCTCGA CACCGAAAGC GAAGCAACGG TGCAAAAAGC TCTCGTCAAT CTTATGAACA ACCGTACCAC CATCGTTGTC GCGCATCGGC TATCCACCGT CATGCATGCC GACAAGATCG TGGTTCTGGA GGGTGGCCGT ATTCGCGAAA TCGGTCGCCA TCAGGATTTG CTCTCCGGTG ACGGTCTTTA CCGGCGTCTG TATGAGATGC AATTCGCCGA CCGGGATTGA
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Protein sequence | MKYNPKQLYQ RLWRYSKPYL PRVFLAMFAS IVVSGVDVAT AKLVKPFVDD VLMAADRGLA NLVPIIVIGL AVCKGGGRYI QEYFIKTAGQ MVVQDIRNDL YRHSMNLSMG YFSRSSTGNV MSRILNDVGA LQRSAADVMV DGLRESFTLM GLTFVAFQSD WRLATIAFLV MPVSIVPASV IGRRIKENTR RGQRTMGTLT RVLQESLAGI KVIKAFGSED RECQRFRTEN KRFYHFIRKV LKYDSAATPV IEILSSFGIG AVLWYGIRRV SDGAMTQGDL SAFIAALFMM YAPMKRLTKV SNTIQRSLGA AERVFELMDE VPEIADQPDA IQAPRAVGNI VFEHVGFSYG DEPVLHDLNL SIRAGEIAAL VGPSGGGKST VIGLLNRFYD PQQGAIHIDG YDIRQLTQDS LKQSMALVDQ ETFLFNDTVW NNIRYGRPEA SDSEVEEAAR QAYADEFVRA MPDGYETVIG DRGVRLSGGQ RQRICIARAI LRDAPILLLD EATSALDTES EATVQKALVN LMNNRTTIVV AHRLSTVMHA DKIVVLEGGR IREIGRHQDL LSGDGLYRRL YEMQFADRD
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