Gene Pcar_1259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_1259 
SymbolmsbA 
ID3723639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp1479116 
End bp1480855 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content55% 
IMG OID637750848 
ProductATP-binding transport protein; multicopy suppressor of HtrB 
Protein accessionYP_356678 
Protein GI77918863 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAATACA ATCCTAAACA ACTTTATCAG CGCCTTTGGC GCTATTCCAA GCCTTATCTG 
CCCCGGGTGT TTCTGGCGAT GTTCGCATCT ATCGTGGTTT CCGGCGTGGA TGTGGCAACC
GCCAAGTTGG TGAAGCCCTT TGTCGATGAT GTGCTGATGG CGGCCGACAG AGGTCTGGCC
AATCTGGTAC CGATCATCGT GATTGGTCTG GCTGTTTGCA AGGGAGGCGG GCGTTATATC
CAGGAATATT TTATCAAGAC TGCCGGTCAG ATGGTGGTGC AGGATATCCG TAATGATCTC
TATCGACATT CCATGAATCT CTCCATGGGA TACTTTTCGC GCAGTTCCAC GGGCAACGTG
ATGTCTCGCA TCCTTAACGA TGTCGGTGCC CTGCAGAGAT CAGCCGCGGA TGTCATGGTC
GATGGCCTGC GGGAGAGTTT TACCCTTATG GGGCTGACTT TCGTGGCTTT TCAGAGCGAT
TGGCGTTTGG CCACCATTGC ATTTCTGGTG ATGCCTGTAT CCATTGTTCC CGCAAGTGTC
ATCGGCAGAC GTATCAAAGA AAACACCCGG CGGGGCCAAC GCACCATGGG TACCTTGACC
CGGGTTCTGC AGGAGAGTCT TGCCGGCATC AAAGTCATCA AGGCCTTTGG CTCCGAAGAT
CGGGAATGTC AGCGGTTCAG AACCGAGAAC AAACGTTTCT ATCATTTTAT CCGTAAGGTT
CTGAAGTACG ATTCGGCGGC CACCCCAGTG ATCGAGATCC TCTCGTCCTT CGGCATCGGC
GCCGTTCTTT GGTACGGTAT CCGCCGGGTC AGCGACGGAG CCATGACGCA GGGGGATTTG
TCGGCGTTTA TCGCCGCATT GTTCATGATG TATGCCCCCA TGAAGCGTTT GACCAAGGTA
AGCAATACCA TCCAGCGGTC ACTCGGTGCC GCGGAGCGGG TCTTTGAACT CATGGATGAA
GTTCCCGAAA TTGCCGATCA GCCCGATGCC ATACAGGCGC CAAGAGCTGT CGGGAATATC
GTTTTTGAGC ATGTGGGTTT CTCGTATGGT GATGAGCCGG TGCTGCATGA TCTTAATCTG
TCGATTCGGG CCGGGGAAAT TGCGGCCCTG GTCGGTCCGA GCGGCGGCGG TAAATCGACC
GTTATCGGCC TTCTGAACCG TTTTTACGAC CCGCAACAGG GTGCCATTCA TATCGATGGG
TACGATATCC GTCAATTGAC CCAGGATAGC CTCAAACAGA GCATGGCCCT GGTCGATCAG
GAAACCTTTT TGTTTAACGA TACGGTGTGG AATAATATCC GTTACGGTCG TCCCGAAGCC
AGCGATTCCG AAGTCGAAGA GGCTGCCAGG CAGGCTTATG CGGACGAGTT CGTGCGTGCC
ATGCCCGATG GGTATGAAAC GGTTATCGGC GACCGGGGCG TCCGCCTGTC CGGCGGCCAG
CGCCAGCGCA TCTGCATTGC ACGCGCCATT TTGCGCGATG CGCCGATTCT ACTGCTTGAC
GAGGCGACCA GTGCCCTCGA CACCGAAAGC GAAGCAACGG TGCAAAAAGC TCTCGTCAAT
CTTATGAACA ACCGTACCAC CATCGTTGTC GCGCATCGGC TATCCACCGT CATGCATGCC
GACAAGATCG TGGTTCTGGA GGGTGGCCGT ATTCGCGAAA TCGGTCGCCA TCAGGATTTG
CTCTCCGGTG ACGGTCTTTA CCGGCGTCTG TATGAGATGC AATTCGCCGA CCGGGATTGA
 
Protein sequence
MKYNPKQLYQ RLWRYSKPYL PRVFLAMFAS IVVSGVDVAT AKLVKPFVDD VLMAADRGLA 
NLVPIIVIGL AVCKGGGRYI QEYFIKTAGQ MVVQDIRNDL YRHSMNLSMG YFSRSSTGNV
MSRILNDVGA LQRSAADVMV DGLRESFTLM GLTFVAFQSD WRLATIAFLV MPVSIVPASV
IGRRIKENTR RGQRTMGTLT RVLQESLAGI KVIKAFGSED RECQRFRTEN KRFYHFIRKV
LKYDSAATPV IEILSSFGIG AVLWYGIRRV SDGAMTQGDL SAFIAALFMM YAPMKRLTKV
SNTIQRSLGA AERVFELMDE VPEIADQPDA IQAPRAVGNI VFEHVGFSYG DEPVLHDLNL
SIRAGEIAAL VGPSGGGKST VIGLLNRFYD PQQGAIHIDG YDIRQLTQDS LKQSMALVDQ
ETFLFNDTVW NNIRYGRPEA SDSEVEEAAR QAYADEFVRA MPDGYETVIG DRGVRLSGGQ
RQRICIARAI LRDAPILLLD EATSALDTES EATVQKALVN LMNNRTTIVV AHRLSTVMHA
DKIVVLEGGR IREIGRHQDL LSGDGLYRRL YEMQFADRD