Gene Pcar_0727 details

Gene Information

• Locus tag: Pcar_0727
• Symbol: rpsD
• ID: 3723316
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 865700
• End bp: 866329
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637750318
• Product: 30S ribosomal protein S4
• Protein accession: YP_356156
• Protein GI: 77918341
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 49
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCTAGAT ATACTGGGCC TGTCTGCCGC TTGTGCAGAA GAGAAACTAT GAAGCTGTTC 
CTTAAGGGGG ACAGGTGTTA TACAGATAAA TGCGCTCTGG AACGGCGCAA CTATGCGCCT 
GGTCAGCATG GCCAGGGCCG CACCAAGGTT TCCGATTACG GAACGCAGTT GCGTGAAAAG 
CAGCGTATGA AACGTACATA CGGTTTGCTG GAAAAACAGT TCCGCGCCTA TTTCGATAAA 
GCGGATAGTA TGAAGGGTGT GACCGGCGAG AATCTTCTGG TTCTGCTCGA GCGTCGTCTG 
GACAGTGCCG TTTACCGTCT CGGGTTCGCG AGTTCCCGTA CGGAAGGCCG TGCTCTGGTT 
CGTCAGGGGC ATTTCCTGGT CAACGGACGC AAAGTCAACA TTCCTTCTTA TGTCATGCGT 
CCCAACGATG TGATCGAATT GCGCGAGAAG AGCCGCAAGA TCACTCGTAT CAATGATGCG 
TTGGACGGTG TCATGCGACG CGGCCTGCCT TCCTGGGTTG AGCTTGATCG TGAAGCCTTC 
AAGGGCACCT TCAAGACTCT GCCGGTGCGC GAGGAAATGA CCACGCCTGC CTTCCAGGAG 
CAGCTGATCG TCGAACTGTA CTCCAAGTAA 

 

Protein sequence

MARYTGPVCR LCRRETMKLF LKGDRCYTDK CALERRNYAP GQHGQGRTKV SDYGTQLREK 
QRMKRTYGLL EKQFRAYFDK ADSMKGVTGE NLLVLLERRL DSAVYRLGFA SSRTEGRALV 
RQGHFLVNGR KVNIPSYVMR PNDVIELREK SRKITRINDA LDGVMRRGLP SWVELDREAF 
KGTFKTLPVR EEMTTPAFQE QLIVELYSK