Gene Pcar_0702 details

Gene Information

• Locus tag: Pcar_0702
• Symbol: rplD
• ID: 3723387
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 853905
• End bp: 854525
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637750293
• Product: 50S ribosomal protein L4
• Protein accession: YP_356131
• Protein GI: 77918316
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0000000000569503
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAAA TCGCAGTTTA TGACATAAAC CGGAATCAGG TGTCGGAACG GGAACTCTCT 
GACGAGGTGT TCAATGCCGA AGTCAAAGAG TATCTGATTC ATGATATGGT CCGTTATCAG 
TTGGCCGCTC GTCGGCAGGG AACTTCGGCC GCAAAAAACC GCAGTGCGGT TGCCGGTGGT 
GGTAAAAAGC CCTATCGTCA AAAAGGGACT GGTAACGCCC GTCAGGGTAC CATACGTGCA 
CCTCATTTCG TGGGTGGCGG AGCTGCCTTT GGGCCGAGTC CGCGTGATTT CAGCTTCAAG 
CTGAACCGGA AAGTAAAGAA GGCTGCGTTG CGTAGCGCAC TGTCCGCTCG TTTTAAAGAA 
GAGCGGGTGG CGGTGCTGAA TGACTTCCAG CTCGAAAAAA TCGGAACCAA AGCTGTGGTG 
GAGGTTCTCA ACCGATTCGA GCTGAGCAAC GTGCTGGTCG TCGTTGGTGA AGACAATCGG 
AACCTTGAGC TTTCTGCACG CAACCTGCCT CATGTCAAAG TTCTTAAAGC CGAAGGTGTG 
AACGTTTACG ATCTGATGAA CCATCGGAAT CTGGTTGTCA CCGAAGGGGC TGTCGAACAG 
TTGGAAGGAG CGTTAGGGTA A 

 

Protein sequence

MAKIAVYDIN RNQVSERELS DEVFNAEVKE YLIHDMVRYQ LAARRQGTSA AKNRSAVAGG 
GKKPYRQKGT GNARQGTIRA PHFVGGGAAF GPSPRDFSFK LNRKVKKAAL RSALSARFKE 
ERVAVLNDFQ LEKIGTKAVV EVLNRFELSN VLVVVGEDNR NLELSARNLP HVKVLKAEGV 
NVYDLMNHRN LVVTEGAVEQ LEGALG