Gene Pcar_0505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0505 
Symbol 
ID3725892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp615098 
End bp616141 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content55% 
IMG OID637750091 
ProductTfp pilus assembly protein, pilus retraction ATPase PilT 
Protein accessionYP_355935 
Protein GI77918120 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones65 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAA TTGATGCGCT GTTCAAAATA TTGAAAGAAA AAGGCGGATC GGACCTGCAC 
CTTTCAGCAG GCAATCCGCC GCTTATACGC CGATCGGGGC AACTGGAACC CATTTTGACT 
CAAGTTCTGA CCCACGAACA AAATAAGGCG TTGCTCTACG AAATTATGGG CGAAGCCCAG 
CGCAAAACCT ATGAAACGAC CCGCGATCTC GATTTTGCCT ATGAGGTAAC GGAGCTTAAA 
TCGCGTTTTC GTGCCAACAT CTTTATGGGC CGGCTCGGTA TGGGCGCTGT GTTTCGCCTG 
ATTCCCGCTG AGATCCTCAG CGCCGACCAG CTTGGCCTTC CCCCTGCGGT ACTCGATTTC 
ACCCAGTTCA AAAAAGGTCT GGTACTGGTC ACCGGACCGA CCGGAAGCGG CAAATCGACC 
ACCCTGGCGG CCATGATCGA TCATGTCAAC CGGACCCGCA AAGAACACAT CCTTACCGTC 
GAAGATCCCA TTGAATTCGT GCATGTCAGC CAGCAGAGCC TCATCAATCA GCGAGAAGTC 
GGGCGCCACA CCCGCTCCTT TGCCGCCGCC CTCAAAGCGG CTCTACGCGA AGATCCGGAT 
CTGATCCTGG TCGGCGAGAT GCGCGATCTG GAAACCATCG AACTGGCCAT CACGGCGGCA 
GAAACCGGGC ATCTGGTATT TGGCACCCTG CATACCAGCA GCGCCGCCAA AACGGTGGAT 
CGCATCATCA ATGTCTTTCC CACCAACCAG CAGGAGCAGG TCCGCACCAT GCTCGGCGAA 
TCCCTCAAGG GAGTCATCGC CCAACAACTG CTAAGGACGG TGGACGGCAA GCGTTGCGCC 
GCCCTTGAGA TCCTGTCTGT AAATTCGGCC GTCTCCAACC TGATCCGGGA AGGTAAAACC 
TTCCAGATTC CGTCGGTTAT TCAAACCGGT AAAACGCAGG GCATGCAGCT CATGGACCAG 
GCCATTCAGG ATCTTCTGAC CGCGGGAAAA ATCACCCGCG AGGAAGCTCA CAAATTCGCC 
TCCAACAAGG CCCTGTTCCA ATAA
 
Protein sequence
MAKIDALFKI LKEKGGSDLH LSAGNPPLIR RSGQLEPILT QVLTHEQNKA LLYEIMGEAQ 
RKTYETTRDL DFAYEVTELK SRFRANIFMG RLGMGAVFRL IPAEILSADQ LGLPPAVLDF 
TQFKKGLVLV TGPTGSGKST TLAAMIDHVN RTRKEHILTV EDPIEFVHVS QQSLINQREV 
GRHTRSFAAA LKAALREDPD LILVGEMRDL ETIELAITAA ETGHLVFGTL HTSSAAKTVD 
RIINVFPTNQ QEQVRTMLGE SLKGVIAQQL LRTVDGKRCA ALEILSVNSA VSNLIREGKT 
FQIPSVIQTG KTQGMQLMDQ AIQDLLTAGK ITREEAHKFA SNKALFQ