Gene Pcar_0408 details

Gene Information

• Locus tag: Pcar_0408
• Symbol: smf
• ID: 3723197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 499874
• End bp: 500974
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637749993
• Product: Rossmann-fold nucleotide-binding protein
• Protein accession: YP_355838
• Protein GI: 77918023
• COG category: [L] Replication, recombination and repair; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
• TIGRFAM ID: [TIGR00732] DNA protecting protein DprA

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.000102128
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACCCA AAGAACAGGC GTGGTTGCGG CTGCATCTGA CCCCGGGACT GGGGCGCGCC 
GGTATCATCC GCCTGATGGA AGCATTCGGT TCGCCCGAAG CCGCCCTTAT CGCCAGTCCC 
CGGGAATGGC AAAAACGCGC CAGGATCCGC GCCGCCGTAG CCGAGGCGCT GCCGGCAGAA 
AACTCTCCCC TGTATCTGCA GACCCTTGAG GAATTAACGC AGCTGGAAGT CGGCATCCTG 
TCGCTGTGGG ATGAAAAGCG CTACCCTGCC TTGCTTCGCA CCATCTACGA CCCGCCCGCC 
CTGCTCTATA TCCGGGGAAC CCTGACCGAA CAACCCGGTC TTGCCGTCGT GGGTGCGCGA 
AAAGCCACCG TCGCCGCCCG CCAGAACACG CACCATCTAT GTCGCCAGCT TGCCGCCCAA 
GGCATCGCGA TTGTCAGCGG ACTGGCCCGC GGCATCGATC GGTCCGCTCA CGAAGGGGCC 
CTGGCCGCTG GCGGTCACAC CGTAGCCGTC CTCGGTTGCG GCATAGATCG CATCTATCCG 
GCGGAAAACA AGCAGCTTTT CAACGACATA TTGGATCAGG GCGGCGCCAT CCTGTCGGAA 
TACCCACCTG GAGCACCACC CCTGGCCAGG CATTTCCCGG GACGCAACCG CATTATCAGC 
GGCATATGTC GCGCAGTGCT GGTGGTTGAA GCGGCGCAGC GCAGCGGTTC TTTGATTACC 
GCAGAATTCG CCTTGGAACA GGGCCGCGAA GTGTTCGCCC TCCCCGGCCC CATCTGCAAT 
CCCGCCAGTC ACGGCACCAA TCAACTCCTT AAAGATGGCG CTCACCTGGT TACCGAAGCC 
GCGGATATCC TGCAAATTTT CATGCCGGGA CGATCCGCCC CGGAGTGCGT ACCGGCCGAC 
GATGGCATGG TCAAAAAACT CTCCGGCACC GCCCTGAAGG TTTACCAGGC GTTGCAGGAC 
ACCCCCTTGC ACGTCGACGA GCTGGCCAGG AAATGCGGCT TGACTCCTAT GGAGGTTTCC 
GCTATTTTAC TCCACTTAGA ACTTGAGGAC GGAGCAATTC AGCTACCCGG AATGCGCTTT 
GTGCGCAAAC GGAGCACCTG A 

 

Protein sequence

MTPKEQAWLR LHLTPGLGRA GIIRLMEAFG SPEAALIASP REWQKRARIR AAVAEALPAE 
NSPLYLQTLE ELTQLEVGIL SLWDEKRYPA LLRTIYDPPA LLYIRGTLTE QPGLAVVGAR 
KATVAARQNT HHLCRQLAAQ GIAIVSGLAR GIDRSAHEGA LAAGGHTVAV LGCGIDRIYP 
AENKQLFNDI LDQGGAILSE YPPGAPPLAR HFPGRNRIIS GICRAVLVVE AAQRSGSLIT 
AEFALEQGRE VFALPGPICN PASHGTNQLL KDGAHLVTEA ADILQIFMPG RSAPECVPAD 
DGMVKKLSGT ALKVYQALQD TPLHVDELAR KCGLTPMEVS AILLHLELED GAIQLPGMRF 
VRKRST