Gene Pcar_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0406 
SymboltopA 
ID3723195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp496745 
End bp499270 
Gene Length2526 bp 
Protein Length841 aa 
Translation table11 
GC content57% 
IMG OID637749991 
ProductDNA topoisomerase I 
Protein accessionYP_355836 
Protein GI77918021 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.064646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACAAT CCCTGGTAAT AGTCGAATCG CCCGCCAAGG CGAAAACCAT CGAAAAATTT 
CTCGGCCCGG GCTATAAGGT CCTGGCTTCC TATGGCCACG TCCGCGCCTT GCCCAGCAAA
CAGGGCTCGG TCGACGTGGA GCATAATTTT TCCCCCCTTT ACCACGTTCT CCCCGAAAGC
CAGAAACACA TCGAGCTGCT GAAAAAAGAA GCCAAAAAGA GCCGGGAACT GATTCTGGCC
ACTGACCCCG ACCGCGAAGG GGAGGCTATC GCCTGGCACT TGCTGGAGGC TCTCGGGATC
GACGAAAACG CAAAAAGCCC TGAGGTCAAA CGGGTTACTT TTCACGAAAT CACCAAAGGC
GCCATCCAGG AAGCCATCTC CAAACCCGGA CATATCGCAC GGGAGTTGGT CGATGCCCAG
CAGGCGCGCT CCATACTCGA CTATCTGGTC GGCTTCAATC TGTCGCCCTT TTTGTGGAAA
AAGATCCGTT ACGGACTGTC CGCCGGACGG GTGCAATCCG TTGCACTGCG CCTGATCTGC
GAGCGGGAAA AAGAGATTCA GGCTTTTGAA GCGCGTGAAT ACTGGACCAT CGAAACCCGA
CTGGCCACGG AGCAGGGCAG CGTGTTTCCA GCCCGGCTGT ATGCCGTCGA CGGGAACAGT
CTCGGCAAGT TCGACATTAA CCAGGAAGCG CAGGCCCTGG AACTGGTCAA AGCGATCGGC
AGCGAAGCGT TTCAGGTGGA GAAGCTCAAA AAAACCTCCA AAAAACGCAA TCCCGCAGCG
CCCTTCACCA CCAGCACCCT GCAACAGGAA GCCAGTCGCA AACTCGGTTT TTCCGCACGC
AAAACCATGA CGGTGGCCCA GAAACTGTAT GAGGGGATCG ATGTCGGCAA CGGACTCGAA
GGTCTGATCA CCTACATGCG TACCGACTCG GTGGCCCTGT CGCAGGTCGC CACCGGTGAA
GCTCGCGAAC TCATCACCCG CATGTACGGC GAGGACTACG CCCTCGACAA GCCGCGCGTA
TTTAAAAACA AAGCTAAAAA CGCCCAGGAA GCCCATGAGG CGGTGCGACC CACCTCGCTG
TCCAACCTGC CGGACCAGAT CAAAGCCCAT TTGAGCTCCG ACCAGTTCAA ACTCTACCGG
CTGATCTGGC AGCGTACCGT GGCATCGCAG ATGGCTACCG CCCAGCTGGA AGCCACCACC
GTCGACATCC GCGCCGGCGA ACGCTTCGTA TTCCGGGCCT CCGGCCAGGT CGTCCGCTTC
CCCGGCTTCA TGAAGCTGTA TATCGAGGAC ACCGACAAGG ACGAGGACCA GGACCGTCAG
GAAGAAGGTA CCTTGCCGCC ACTGGAACAG GAACAGCCCC TGGATTGCCA GGAAGTGCAG
CCTTCCCAGC ACTTCACCCA GCCCCCGCCT CGCTTTACCG AGGCCAGTCT GGTCAAAACC
CTTGAGGAAC ACGGCATCGG CCGCCCCTCA ACCTATGCCT CCATCATCAA CACCCTCACC
ACCCGCAAAT ACGTGCGTCT GGAAAAACGC GCTTTTTATA CCGAAGACGT GGGAATGGTG
GTCAACGATT TGCTGGTCAA CCACTTCAAC AAATACGTCG ATTACGATTT TACCGCCCAG
TTGGAAGAAG ATCTCGACGC CATCTCCCGC GGCGAGCGGG AATGGCAACC GGTACTGAAG
GATTTCTGGG AACCGTTCAT CTCCCGGCTG AAGGAAAAGG AGACCCAGAT CTCCAAGCAG
GATGTCACCA CGGAAAAGAC CGATCGTATC TGCCCCGAGT GCGGCAAGCC CCTGGTCATC
AAACTGGGGC GTTCCGGTCG TTTCCTGGCC TGCTCCGGAT TCCCGGATTG CCGCTATACC
GAGCCGTTGG CCGGACAGGA ACGCGAAGAG CCGGTCATGT CCGATCAGAC CTGCGAAAAA
TGCGGCGCCC CCATGCTCAT CAAACAGGGG CGCTACGGCA AGTTCCTGGC TTGCTCGGCG
TATCCGGAGT GCAAAAACAT TCAACCCCTG GTCAAACCCA AGGCCCTCGG TATCACCTGC
CCGCAATGCG GCGAAGGCGA ACTGATGGAG AAGAAAAGCC GCTATGGCAA AATCTTCTAC
TCCTGCAACC GTTACCCGAA ATGCAAATAC GCGCTGTGGG ATCTGCCCAT TGAAGAGCCT
TGCCCCAAAT GCAAGTTTCC GCTGGTGGTG GAAAAAACCA CCAAACGCCA GGGGACCTTC
CGCAAGTGCC CGCAAGAAGA TTGCGACTGG ACGGTTGTTT TGATTCCGCC TGAGCCCAAG
GCCGCAACCA AAAAGACCAC AACCCAAAAA ACCGCGGCCA AGAAGACCCC GGCGAAAAAA
ACGGCGGCTA AAAAAACTAC GGCAGCGAAA CCGGCTGAAA AGAAAACTGC GAGCAAAAAA
TCCGCAGCGG CAAAACCGGC CGCAAAGAAA ACCGCGGCAA AAAAGACCAC AACCACCAAG
GCGGCCACCC AAAAAGCCGC CCCGAAAAAA ACTGCGGCCA AGAAGGCGAC CAAGAAAGAA
GAGTAA
 
Protein sequence
MAQSLVIVES PAKAKTIEKF LGPGYKVLAS YGHVRALPSK QGSVDVEHNF SPLYHVLPES 
QKHIELLKKE AKKSRELILA TDPDREGEAI AWHLLEALGI DENAKSPEVK RVTFHEITKG
AIQEAISKPG HIARELVDAQ QARSILDYLV GFNLSPFLWK KIRYGLSAGR VQSVALRLIC
EREKEIQAFE AREYWTIETR LATEQGSVFP ARLYAVDGNS LGKFDINQEA QALELVKAIG
SEAFQVEKLK KTSKKRNPAA PFTTSTLQQE ASRKLGFSAR KTMTVAQKLY EGIDVGNGLE
GLITYMRTDS VALSQVATGE ARELITRMYG EDYALDKPRV FKNKAKNAQE AHEAVRPTSL
SNLPDQIKAH LSSDQFKLYR LIWQRTVASQ MATAQLEATT VDIRAGERFV FRASGQVVRF
PGFMKLYIED TDKDEDQDRQ EEGTLPPLEQ EQPLDCQEVQ PSQHFTQPPP RFTEASLVKT
LEEHGIGRPS TYASIINTLT TRKYVRLEKR AFYTEDVGMV VNDLLVNHFN KYVDYDFTAQ
LEEDLDAISR GEREWQPVLK DFWEPFISRL KEKETQISKQ DVTTEKTDRI CPECGKPLVI
KLGRSGRFLA CSGFPDCRYT EPLAGQEREE PVMSDQTCEK CGAPMLIKQG RYGKFLACSA
YPECKNIQPL VKPKALGITC PQCGEGELME KKSRYGKIFY SCNRYPKCKY ALWDLPIEEP
CPKCKFPLVV EKTTKRQGTF RKCPQEDCDW TVVLIPPEPK AATKKTTTQK TAAKKTPAKK
TAAKKTTAAK PAEKKTASKK SAAAKPAAKK TAAKKTTTTK AATQKAAPKK TAAKKATKKE
E