Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_0406 |
Symbol | topA |
ID | 3723195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 496745 |
End bp | 499270 |
Gene Length | 2526 bp |
Protein Length | 841 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637749991 |
Product | DNA topoisomerase I |
Protein accession | YP_355836 |
Protein GI | 77918021 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.064646 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAAT CCCTGGTAAT AGTCGAATCG CCCGCCAAGG CGAAAACCAT CGAAAAATTT CTCGGCCCGG GCTATAAGGT CCTGGCTTCC TATGGCCACG TCCGCGCCTT GCCCAGCAAA CAGGGCTCGG TCGACGTGGA GCATAATTTT TCCCCCCTTT ACCACGTTCT CCCCGAAAGC CAGAAACACA TCGAGCTGCT GAAAAAAGAA GCCAAAAAGA GCCGGGAACT GATTCTGGCC ACTGACCCCG ACCGCGAAGG GGAGGCTATC GCCTGGCACT TGCTGGAGGC TCTCGGGATC GACGAAAACG CAAAAAGCCC TGAGGTCAAA CGGGTTACTT TTCACGAAAT CACCAAAGGC GCCATCCAGG AAGCCATCTC CAAACCCGGA CATATCGCAC GGGAGTTGGT CGATGCCCAG CAGGCGCGCT CCATACTCGA CTATCTGGTC GGCTTCAATC TGTCGCCCTT TTTGTGGAAA AAGATCCGTT ACGGACTGTC CGCCGGACGG GTGCAATCCG TTGCACTGCG CCTGATCTGC GAGCGGGAAA AAGAGATTCA GGCTTTTGAA GCGCGTGAAT ACTGGACCAT CGAAACCCGA CTGGCCACGG AGCAGGGCAG CGTGTTTCCA GCCCGGCTGT ATGCCGTCGA CGGGAACAGT CTCGGCAAGT TCGACATTAA CCAGGAAGCG CAGGCCCTGG AACTGGTCAA AGCGATCGGC AGCGAAGCGT TTCAGGTGGA GAAGCTCAAA AAAACCTCCA AAAAACGCAA TCCCGCAGCG CCCTTCACCA CCAGCACCCT GCAACAGGAA GCCAGTCGCA AACTCGGTTT TTCCGCACGC AAAACCATGA CGGTGGCCCA GAAACTGTAT GAGGGGATCG ATGTCGGCAA CGGACTCGAA GGTCTGATCA CCTACATGCG TACCGACTCG GTGGCCCTGT CGCAGGTCGC CACCGGTGAA GCTCGCGAAC TCATCACCCG CATGTACGGC GAGGACTACG CCCTCGACAA GCCGCGCGTA TTTAAAAACA AAGCTAAAAA CGCCCAGGAA GCCCATGAGG CGGTGCGACC CACCTCGCTG TCCAACCTGC CGGACCAGAT CAAAGCCCAT TTGAGCTCCG ACCAGTTCAA ACTCTACCGG CTGATCTGGC AGCGTACCGT GGCATCGCAG ATGGCTACCG CCCAGCTGGA AGCCACCACC GTCGACATCC GCGCCGGCGA ACGCTTCGTA TTCCGGGCCT CCGGCCAGGT CGTCCGCTTC CCCGGCTTCA TGAAGCTGTA TATCGAGGAC ACCGACAAGG ACGAGGACCA GGACCGTCAG GAAGAAGGTA CCTTGCCGCC ACTGGAACAG GAACAGCCCC TGGATTGCCA GGAAGTGCAG CCTTCCCAGC ACTTCACCCA GCCCCCGCCT CGCTTTACCG AGGCCAGTCT GGTCAAAACC CTTGAGGAAC ACGGCATCGG CCGCCCCTCA ACCTATGCCT CCATCATCAA CACCCTCACC ACCCGCAAAT ACGTGCGTCT GGAAAAACGC GCTTTTTATA CCGAAGACGT GGGAATGGTG GTCAACGATT TGCTGGTCAA CCACTTCAAC AAATACGTCG ATTACGATTT TACCGCCCAG TTGGAAGAAG ATCTCGACGC CATCTCCCGC GGCGAGCGGG AATGGCAACC GGTACTGAAG GATTTCTGGG AACCGTTCAT CTCCCGGCTG AAGGAAAAGG AGACCCAGAT CTCCAAGCAG GATGTCACCA CGGAAAAGAC CGATCGTATC TGCCCCGAGT GCGGCAAGCC CCTGGTCATC AAACTGGGGC GTTCCGGTCG TTTCCTGGCC TGCTCCGGAT TCCCGGATTG CCGCTATACC GAGCCGTTGG CCGGACAGGA ACGCGAAGAG CCGGTCATGT CCGATCAGAC CTGCGAAAAA TGCGGCGCCC CCATGCTCAT CAAACAGGGG CGCTACGGCA AGTTCCTGGC TTGCTCGGCG TATCCGGAGT GCAAAAACAT TCAACCCCTG GTCAAACCCA AGGCCCTCGG TATCACCTGC CCGCAATGCG GCGAAGGCGA ACTGATGGAG AAGAAAAGCC GCTATGGCAA AATCTTCTAC TCCTGCAACC GTTACCCGAA ATGCAAATAC GCGCTGTGGG ATCTGCCCAT TGAAGAGCCT TGCCCCAAAT GCAAGTTTCC GCTGGTGGTG GAAAAAACCA CCAAACGCCA GGGGACCTTC CGCAAGTGCC CGCAAGAAGA TTGCGACTGG ACGGTTGTTT TGATTCCGCC TGAGCCCAAG GCCGCAACCA AAAAGACCAC AACCCAAAAA ACCGCGGCCA AGAAGACCCC GGCGAAAAAA ACGGCGGCTA AAAAAACTAC GGCAGCGAAA CCGGCTGAAA AGAAAACTGC GAGCAAAAAA TCCGCAGCGG CAAAACCGGC CGCAAAGAAA ACCGCGGCAA AAAAGACCAC AACCACCAAG GCGGCCACCC AAAAAGCCGC CCCGAAAAAA ACTGCGGCCA AGAAGGCGAC CAAGAAAGAA GAGTAA
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Protein sequence | MAQSLVIVES PAKAKTIEKF LGPGYKVLAS YGHVRALPSK QGSVDVEHNF SPLYHVLPES QKHIELLKKE AKKSRELILA TDPDREGEAI AWHLLEALGI DENAKSPEVK RVTFHEITKG AIQEAISKPG HIARELVDAQ QARSILDYLV GFNLSPFLWK KIRYGLSAGR VQSVALRLIC EREKEIQAFE AREYWTIETR LATEQGSVFP ARLYAVDGNS LGKFDINQEA QALELVKAIG SEAFQVEKLK KTSKKRNPAA PFTTSTLQQE ASRKLGFSAR KTMTVAQKLY EGIDVGNGLE GLITYMRTDS VALSQVATGE ARELITRMYG EDYALDKPRV FKNKAKNAQE AHEAVRPTSL SNLPDQIKAH LSSDQFKLYR LIWQRTVASQ MATAQLEATT VDIRAGERFV FRASGQVVRF PGFMKLYIED TDKDEDQDRQ EEGTLPPLEQ EQPLDCQEVQ PSQHFTQPPP RFTEASLVKT LEEHGIGRPS TYASIINTLT TRKYVRLEKR AFYTEDVGMV VNDLLVNHFN KYVDYDFTAQ LEEDLDAISR GEREWQPVLK DFWEPFISRL KEKETQISKQ DVTTEKTDRI CPECGKPLVI KLGRSGRFLA CSGFPDCRYT EPLAGQEREE PVMSDQTCEK CGAPMLIKQG RYGKFLACSA YPECKNIQPL VKPKALGITC PQCGEGELME KKSRYGKIFY SCNRYPKCKY ALWDLPIEEP CPKCKFPLVV EKTTKRQGTF RKCPQEDCDW TVVLIPPEPK AATKKTTTQK TAAKKTPAKK TAAKKTTAAK PAEKKTASKK SAAAKPAAKK TAAKKTTTTK AATQKAAPKK TAAKKATKKE E
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