| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0388 |
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| Symbol | mshE |
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| ID | 3723332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 477834 |
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| End bp | 479618 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637749973 |
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| Product | MshA biogenesis protein MshE |
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| Protein accession | YP_355818 |
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| Protein GI | 77918003 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.000356112 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCAC GCAAAAAAAT TCGCATCGGT GAATTGCTGG TGCAGCATCA TATCATCAGC
GAGGAGCAGT TGAATACCGC CCTGGCTGAG CAGAAACGCA CCGGCAGTAA ACTGGGGCAC
ACCCTGGTCG AATTGGGCTA TCTCAGCCCG ACCGGCTTTC TCAAGTTTCT CGGCCAGCAG
TTGCAGATCC CCTTTATCGA TCTGCGGCAT TATCAATACA AGGCCGAGAC GGTGCGCCTG
TTGCCGGAAA TTTACGTGCG ACGCTTTCGC GCCCTGGTAT TGGCTGAAGA AGGCGACGGT
CTGCTGGTCG GCATGGCCGA TCCCACAGAT ATCTTCGCGT TTGACGAGTT GCGCCGGATT
CTCAAGCGCC CCGTCAAGCT GGCCGTGGTC GGTGAAGACG AACTCCTCGA TATCGTCGAT
CGCATTTATC GGCGCACCGA TGAAATCATT CATATCGCCG GTGAGCTCAG CGAAGAGCTG
GGCGAAGGCG GTATCGACCT GGAGAGTCTG CTTTCGAGCA GCAATATCGA AGATGCCCCG
GTTGTGCGTC TGCTGCACAC CCTGTTTGAG GATGCGGTGC AGATCGGCGC CTCGGACATT
CATATCGAAC CGGACGAGTC GGTGTTGCGC ATCCGGCAGC GCGTCGACGG TATCCTGCAC
GAACAGGTGA TGAAGGAAAA GCGCATCGGC GGGGCTCTGG TGTCGCGCCT GAAGCTGATG
AGCGGCCTGG ATATTTCCGA GCGTCGTCTG CCCCAGGATG GGCGATTCAA CATCCGCGTG
CGGGGCCGCA GCATCGACAT TCGTCTGTCC ACCATGCCGC TGCAATTCGG CGAATCGGTG
GTCATGCGTC TGCTCGACCA GTCCGGTGGT TTGCTTGCCT TGGAACAGAT CGGAATGCCT
GAAGGCCTGT TGCGGCGTTT CCATAATCTT ATCAAGCGGC CCCACGGGCT GGTGCTGGTA
ACCGGACCGA CGGGTAGCGG CAAGACCACC ACCCTTTACG GGGCCCTCAA CGCCCTCAAC
GATACCAGCA AAAAGATCAT TACCGTCGAG GATCCGGTGG AATATCGCCT GCCGCGCATC
AACCAGGTGC AGGTGCAAAG CCGTATCGAT CTGTCCTTCG CGCGGGTCCT GCGGGCCGCC
CTGCGCCAGG ACCCCGACGT GGTCATGGTC GGCGAGATGC GCGACCAGGA AACCGCCCAG
ATCGGTCTGC GCGCCGCCAT GACCGGCCAC CTGGTACTGT CCACCCTGCA TACCAACGAT
GCCGTGAGCA CCGCACTGCG GCTGCTCGAT ATGGGCGCCG AAGGTTTTGT GGTCGGCAGC
TCGCTGCTGG CCATCCTGGC ACAGCGCCTG GTACGCCGTG TCTGTGAAAG CTGTATGGAG
GACGATCCCC TCGACGCGGG CCAGCGCAGC TGGCTGGCGG CCATGGTCGG GCCGGAAGCC
CACCGACAGG TTTTCAAGCG TGGCGCCGGG TGTCCGCGCT GCCATAACAC CGGTTACCAC
GGGCGTATCG GTATTTTCGA GTTGCTGCAG ATCGACACGT CGTTGGCCGA CGCCCTGCGT
CGCAGCGACA GCGCCGGATT CGCCGAGCTG GCCCGTCGTC AGCCCGGCTT CCAAACCCTT
TCCATGGCGG CTTACGATTA TGCCTGCCAG GGCGTCACCA GCATGGAAGA GGTGCTGCGC
GTTTCCGGCC AGCTCGAAGA TTTTAATTCT GACTCCGGTC GGTATGCCGG TCAGGATCTA
ACAGAGGATG ATGCGGATGC CACAGTTCCG GTACCAGGCA CGTAA
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| Protein sequence | MTARKKIRIG ELLVQHHIIS EEQLNTALAE QKRTGSKLGH TLVELGYLSP TGFLKFLGQQ
LQIPFIDLRH YQYKAETVRL LPEIYVRRFR ALVLAEEGDG LLVGMADPTD IFAFDELRRI
LKRPVKLAVV GEDELLDIVD RIYRRTDEII HIAGELSEEL GEGGIDLESL LSSSNIEDAP
VVRLLHTLFE DAVQIGASDI HIEPDESVLR IRQRVDGILH EQVMKEKRIG GALVSRLKLM
SGLDISERRL PQDGRFNIRV RGRSIDIRLS TMPLQFGESV VMRLLDQSGG LLALEQIGMP
EGLLRRFHNL IKRPHGLVLV TGPTGSGKTT TLYGALNALN DTSKKIITVE DPVEYRLPRI
NQVQVQSRID LSFARVLRAA LRQDPDVVMV GEMRDQETAQ IGLRAAMTGH LVLSTLHTND
AVSTALRLLD MGAEGFVVGS SLLAILAQRL VRRVCESCME DDPLDAGQRS WLAAMVGPEA
HRQVFKRGAG CPRCHNTGYH GRIGIFELLQ IDTSLADALR RSDSAGFAEL ARRQPGFQTL
SMAAYDYACQ GVTSMEEVLR VSGQLEDFNS DSGRYAGQDL TEDDADATVP VPGT
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