| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0385 |
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| Symbol | |
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| ID | 3723329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 473890 |
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| End bp | 475503 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637749970 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_355815 |
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| Protein GI | 77918000 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 0.16862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCTGG CACAATTCGA TCAGCAGCTG GCGGTTGAGC AAAAGGTGCC GAGTACCCTG
CCGGATGAAG TGTCGGCAGC TCTATTGCCC CCCGCCAAGG ACGATGCAGA CTGGCAGGGG
CACATGGTGG AGGAACCGCG TTTCGATGTG TTTGCCAAGG ATACCCCAGC TCAGGAGTTT
TTTACGGGTC TGGTCGAGGG AACTCCCTAC AACATGGTGG TACATCCCTC GGTTTCCGGA
ACGGTATCCC TCAATCTCAA GGCCGTGACC ATTCCTGAAA TCATGGATGT GCTGCGGGAT
GTTTACGGTT TCCAATACCG GACCACCCGC TCCGGATTTC AGGTCATTCC CGATACCCTT
CAGACCCAGG TGTTCTATGT CAATTATCTC AACCTGGTGC GTAAGGGGTT GTCGCAGACC
CGGGTCAGTT CCGGACAGGT CAGCGAGGCG GGCAGCGGCG ATGATGACGA CGACAGCGGA
TCGAACCGGT CGAGACGCGA CGACGGCAAT GCCATGGTTT CGGGCAGTCG CATCGACACC
GAATCGAGTG CCGATTTCTG GACCGAGTTG AGCGTGGCGC TGCGCACCAT GGTCGGCCAG
GAGGACGGCC GACGGGTCGT GATCCAGCCG CAGGCCGGCG TGGTGGTGGT ACGCGCTCTG
CCCGAGGAAT TGCGCACCAT CGAGCAGTAT CTGGGCACTA TTCAGGGCAA TCTGCAGCGC
CAGGTCATTC TCGAAGCCAA AATTCTCGAG GTTGAGCTGG GCGATGGTTA TCAGGCCGGT
ATCAACTGGT CGGCGGTGAA CGGGGATGTT TCCATGGCGC AGACGCGCGG CGATATTTTC
GCCGACAACG GATTGGCCGA TATCGTTGGC AGTGACGGTG CGGCCGTGAC CTCGGGATTG
GCCTCCGGTG CTTTTGGCGG GGTCTTCAGC GCCGCGTTGA ATTTCAAGAA TTTCCAGGCT
TTTATCGAAT TACTGGAGAC CCAGGGCGAT GTTCAGGTAT TGTCGAGTCC GCGTATCGCC
ACGGTCAACA ACCAGAAAGC GGTCATCAAG GTCGGTTCCG ATGAGTTCTT CGTCACGGAT
GTTTCAAGTG ATACGGTAAC CGGCACCACC ACGACCACCT CTCCGGATAT CACCCTGACG
CCGTTTTTCT CCGGCATCGC CCTCGATGTG ACGCCGCAGA TCGATCCCAA GGGCAAGGTG
ACACTGCACA TTCATCCAAC CGTCAGCGAA GTTTCCGATC AGACCAAAGA CATCACGGTG
GCCGGGGAAA CCCAGACTCT GCCCCTGGCT TTCAGTACGG TGCGCGAGTC CGACAGCATT
GTCGCAGCTG AGAGTGGTCA GGTTGTAGTC ATTGGCGGCT TGATGAAAGA TCAGCTGCAG
AACAGGGATG CCAGCGTGCC TCTGCTTGGG CGTCTGCCCG GGGTGGGTGC CCTGTTCCGG
CATACCCAGT CGGTATCGCG CAAAAGTGAG CTGGTGATTC TTCTGAGGCC GATGGTGGTC
GAAGCCGGTA CCTGGAACCA GGCGCTGGAT GCTTCGCGGC AGCGGTTCAA AAACCTGGGT
AGCGAATTCG ATACCGAGTG GCGCGGCGGC AAATTCGCGC GGCCCGCTCG TTAA
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| Protein sequence | MPLAQFDQQL AVEQKVPSTL PDEVSAALLP PAKDDADWQG HMVEEPRFDV FAKDTPAQEF
FTGLVEGTPY NMVVHPSVSG TVSLNLKAVT IPEIMDVLRD VYGFQYRTTR SGFQVIPDTL
QTQVFYVNYL NLVRKGLSQT RVSSGQVSEA GSGDDDDDSG SNRSRRDDGN AMVSGSRIDT
ESSADFWTEL SVALRTMVGQ EDGRRVVIQP QAGVVVVRAL PEELRTIEQY LGTIQGNLQR
QVILEAKILE VELGDGYQAG INWSAVNGDV SMAQTRGDIF ADNGLADIVG SDGAAVTSGL
ASGAFGGVFS AALNFKNFQA FIELLETQGD VQVLSSPRIA TVNNQKAVIK VGSDEFFVTD
VSSDTVTGTT TTTSPDITLT PFFSGIALDV TPQIDPKGKV TLHIHPTVSE VSDQTKDITV
AGETQTLPLA FSTVRESDSI VAAESGQVVV IGGLMKDQLQ NRDASVPLLG RLPGVGALFR
HTQSVSRKSE LVILLRPMVV EAGTWNQALD ASRQRFKNLG SEFDTEWRGG KFARPAR
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