| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0328 |
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| Symbol | deaD |
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| ID | 3725919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 410936 |
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| End bp | 412687 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637749912 |
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| Product | cold-shock inducible ATP-independent RNA helicase |
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| Protein accession | YP_355758 |
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| Protein GI | 77917943 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000000011259 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAG AAGTGCTTAC CACCTTTGCC GAATTATCTT TGTGCCCCGA AATCAATCGC
GTTATTGAGG AAATCGGGTA CGAAACACCG TCTCCCATCC AGGCGCGCAG TATCCCGCCG
TTGCTGGAAG GCCGGGATCT TTTGGGTCAG GCCCAGACCG GTACGGGGAA AACCGCAGCC
TTTGCCCTGC CGTTACTCAG TCGTCTCGAT TTGTCGCTGC GAAGCCCGCA GGTGCTGGTG
TTGACCCCGA CACGCGAGCT GGCCTTGCAG GTTGCCGAGG CGGTGCAGAC CTATGCCCGC
CATCTGCAGG GGTTTCATGT GCTGCCCGTG TATGGAGGAC AGAATATGGG ACAACAGTTG
CGCCAGTTGC AGCGCGGTGC CCATGTCGTG GTCGGTACTC CGGGGCGCAT CCAGGATCAT
CTGCGGCGCG GCACTCTGAA GCTCGATCGC CTGTCCTGCG TGGTGGTCGA CGAGGCCGAT
GAGATGCTTA AAATGGGGTT TATCGACGAT GTCGAGCAGA TTCTTGAGCA TGCGCCGGAA
CAGCGGCAGA CGGCTCTTTT CTCCGCCACC ATGCCCAACG AGGTGCTCAA GGTCGCGCGT
CGTCACCTGC GGGAACCCGT CGAGGTGCGC ATCAAGGCCA AAACCTCCAC GGTTGAGACC
ATTTCCCAGC GCTTTTGGCA GGTCAGGGGG GTGCGTAAGC TCGATGCCCT GACGAGGATT
CTCGAGGCCG AAGACATCGA CGCCATGATC GTTTTCGTGC GGACCAAGAT TGCCACTGTC
GAGTTGGCGG AGAAGCTCGA GGCGCGGGGG TTTTCCAGTG CGGCTTTGAA CGGCGATATG
ACCCAGGCTC TGCGGGAGAA AACGGTTGAA CGCCTCAAAA GCGGGAGCCT CGATATCGTT
GTCGCCACCG ATGTCGCGGC CCGTGGTCTT GATGTTCAGC GCATCAGCCA TGTGGTCAAC
TATGATATCC CTTACGACAC GGAATCTTAC GTACATCGCA TCGGTCGTAC CGGCCGGGCG
GGGCGCGAAG GTTCGGCTAT CCTGTTTGTG GCTCCCCGCG AGCGACGTAT GCTCGCAGCG
ATCGAACAGG CGACGCGGCA GAAGATCGCG CCCATGAAAC TGCCGAGTCG CCAGGACATT
ACCAATCGGC GGGTCGCTCT TTTCAAGGAG CAGATTCTCG ATGCCATGCA GTCGCAGGAT
CTTGAGTTTT TCGAAGATTT GATCGACGGT ATTCAGCAGG AATTCGATAC CGAACCCCGA
ACCGTTGCCG CGGCTTTGAC GTATCTTCTG CAGAAGGACC GCCCTCTGCT TCCTGATGAG
GAGGCTTTCG AGGAGGTTCT GCCGGCTTCT GGCGGACGGT TCGATGGTGG CGGCCGGAGT
CATGCCGACG AGGGGCTCCA GCGCTACCGC ATCGAGGTCG GTCGGGTTCA TGGCGTGGTA
CCCGGGCACA TTGTCGGTGC TATCGCCAAC GAGGCGAAAA TCAGCAGTCG CGATATCGGT
CAGATAAAGA TCTATCACGA TTTCAGTTTG GTTGACCTGC CAGCCGATCT TTCACCTGCC
GTTATGCGCC ATTTGCAAAA GGTCTGGGTT TGCGGTCAGC AGTTGCAGCT TGTCCCCGAC
CTCGGCCCCG GCCCTCGCCA GGAAAGGCCT CCCAGGCGTC GCTCCGGCGG GAGATCCTTC
GACAAGCGCG GTGGCAAACC TGGACGGAAG AAATTTTCCG GTGGGAAGCG CCCGCCCAAA
AAGACGCGAT AG
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| Protein sequence | MTEEVLTTFA ELSLCPEINR VIEEIGYETP SPIQARSIPP LLEGRDLLGQ AQTGTGKTAA
FALPLLSRLD LSLRSPQVLV LTPTRELALQ VAEAVQTYAR HLQGFHVLPV YGGQNMGQQL
RQLQRGAHVV VGTPGRIQDH LRRGTLKLDR LSCVVVDEAD EMLKMGFIDD VEQILEHAPE
QRQTALFSAT MPNEVLKVAR RHLREPVEVR IKAKTSTVET ISQRFWQVRG VRKLDALTRI
LEAEDIDAMI VFVRTKIATV ELAEKLEARG FSSAALNGDM TQALREKTVE RLKSGSLDIV
VATDVAARGL DVQRISHVVN YDIPYDTESY VHRIGRTGRA GREGSAILFV APRERRMLAA
IEQATRQKIA PMKLPSRQDI TNRRVALFKE QILDAMQSQD LEFFEDLIDG IQQEFDTEPR
TVAAALTYLL QKDRPLLPDE EAFEEVLPAS GGRFDGGGRS HADEGLQRYR IEVGRVHGVV
PGHIVGAIAN EAKISSRDIG QIKIYHDFSL VDLPADLSPA VMRHLQKVWV CGQQLQLVPD
LGPGPRQERP PRRRSGGRSF DKRGGKPGRK KFSGGKRPPK KTR
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