Gene Pcar_0102 details

Gene Information

• Locus tag: Pcar_0102
• Symbol: ispF
• ID: 3722897
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 124292
• End bp: 124786
• Gene Length: 495 bp
• Protein Length: 164 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637749681
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_355535
• Protein GI: 77917720
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 78
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCGCA TAGGACACGG CTACGATGTT CACCAGTTGG TAGCGGAACG CAAACTCATT 
CTCGGTGGTG TGGATATCCC GCATACGCTT GGCTTGTTGG GCCATTCCGA TGCCGATGTG 
CTGTTGCATG CCATCTGCGA TGCGATCCTC GGCGCCCTCG GCGAAGGCGA TATCGGCAAA 
CATTTCCCCG ACACCGACCC GGCGTACAAG GGCATCTCCA GCATCAAACT GCTGCATGAG 
GTCATGCGCC TGGCCGAAAC CAAAGGGTAC AGGCTTGGCA ACCTCGATGC GACCATCATC 
GCTCAACGTC CCAAGCTCGC CCCCTTTATC GGCAACATGC GCGAAAACAT CGCAGAGGCC 
TGCGGCACCG ACGTATCGCG CATCAATGTC AAGGCGACAA CCACCGAGCA GCTTGGATTT 
GAAGGCCGCG GCGAGGGCAT CTCGTCCCAT GCCGTGGTTC TGCTGAACAA AGCCGCCCAC 
AGCGAAGAGC GTTAG 

 

Protein sequence

MMRIGHGYDV HQLVAERKLI LGGVDIPHTL GLLGHSDADV LLHAICDAIL GALGEGDIGK 
HFPDTDPAYK GISSIKLLHE VMRLAETKGY RLGNLDATII AQRPKLAPFI GNMRENIAEA 
CGTDVSRINV KATTTEQLGF EGRGEGISSH AVVLLNKAAH SEER