Gene Pcar_0086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0086 
SymboltrkH 
ID3722881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp99713 
End bp101086 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content59% 
IMG OID637749665 
ProductTrkH family potassium uptake protein 
Protein accessionYP_355519 
Protein GI77917704 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.29525e-14 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACGAC CTTTTCTGCA AATCAAAAAC CTCGATCCGG GATGGATGCT GATTCTGTAC 
TACGGTTTTG CCATCCTCAT CGGCGCCGCG CTGCTGACCC TGCCCTTTGC CGCGCAGGGC
GCGCCGCTAT CGTTTCTTGA CGCCTTGTTC ACGGCCACCT CGGCCCAGTG CGTCACCGGC
CTGATCGTGG TCGATACCGG CACAAAACTG ACCCTTTTCG GGCAGTTGGT GGTACTGCTG
CTGATCCAGA TCGGAGGCTT GGGGATTACC ACCTTCTCCG TCTACCTGTT CTTCTATCTC
GGCATGGGCG TCGGCATTCG CGATCGCTGG GTGATTCAGG AAACCCTGTT GCATACGCCG
GTCGATTCGC TGCGCGATCT GGTGCGGAGT ATTTTTCGCT ACACCCTGGT TATCGAAGGC
GTCGGTGCCG CCTTGCTCGC CACGGCCTTT GTGCCGCAGA TGGGCTGGAG CAAAGGCCTT
TACAGCGCCG TTTTTCACAG TATTTCGGCG TTCTGCAATG CCGGTTTCTC ATTGAACGCC
GACAGCATGA TCGGTTATCG CGCCAACCCC TTGGTCAATA TCACCCTCAT GGCCCTGATC
ATCCTCGGCG GCATCGGTTT TCTGGTGATC AAGGAAATAT TCGATCTCAG CAAGCAACAC
AACCGACGCC GCCGGCGGCG GTTGTCCCTG CACTCGCGAC TGGTATTCAT GACCACCGCC
GTGCTGATTA TCGGCGGCGC ACTGCTCATC GGCGTGCTTG AAGCCCCCTC CGCCCTGGCT
TCCATGAATA CCGCCGAGAG CATCTGGGTG ACCCTGTTCC AATCCATAAC CGCCCGCACC
GCCGGCTTCA ACTCCATCGA CCTCAACCTT TTCGAGGTGC CGACGCTGTT TCTGATGATG
TTCCTGATGT TCGTCGGAGC GTCTCCGGGC TCATGCGGGG GCGGCATCAA AACCACCAGT
CTGGCACTGT TCGTCGCCAT TATGCACAGT CGCCTCAAAG GTAACCCGCA CACCAACGTC
TTTCGACGCA CCCTGCCGGA AGCGGCCGTT ACCAAGACCC TGACCCTGGT CATGACCGCC
TTGTTGTTTG TGGCCTTTGC CGTCTTTTCC TTGCTGGCGG TCCAGATGCA GGGCATGCCG
GCCATGGCCA GCCGCGGTGT GTTTCTGGAA TACACGTTCG AAGCTGTTTC GGCATTTGCC
ACCGTCGGTC TATCCCTCGG CGCCACGGCC AAACTGGTAC CGGCCGGCAA ACTGATCGTC
ATCGTGCTGA TGTTCATCGG CCGGGTCGGA CTGCTTACCG TGGCCTTTAC CATGATTCGC
CGATCCCGGG AAGGCGCCGT ACACTACGCC GAAGAAAACA TCATGATCGG TTGA
 
Protein sequence
MTRPFLQIKN LDPGWMLILY YGFAILIGAA LLTLPFAAQG APLSFLDALF TATSAQCVTG 
LIVVDTGTKL TLFGQLVVLL LIQIGGLGIT TFSVYLFFYL GMGVGIRDRW VIQETLLHTP
VDSLRDLVRS IFRYTLVIEG VGAALLATAF VPQMGWSKGL YSAVFHSISA FCNAGFSLNA
DSMIGYRANP LVNITLMALI ILGGIGFLVI KEIFDLSKQH NRRRRRRLSL HSRLVFMTTA
VLIIGGALLI GVLEAPSALA SMNTAESIWV TLFQSITART AGFNSIDLNL FEVPTLFLMM
FLMFVGASPG SCGGGIKTTS LALFVAIMHS RLKGNPHTNV FRRTLPEAAV TKTLTLVMTA
LLFVAFAVFS LLAVQMQGMP AMASRGVFLE YTFEAVSAFA TVGLSLGATA KLVPAGKLIV
IVLMFIGRVG LLTVAFTMIR RSREGAVHYA EENIMIG