Gene Pcar_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0046 
Symbol 
ID3723165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp53028 
End bp56228 
Gene Length3201 bp 
Protein Length1066 aa 
Translation table11 
GC content62% 
IMG OID637749625 
Productputative serine protease 
Protein accessionYP_355479 
Protein GI77917664 
COG category[S] Function unknown 
COG ID[COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.07412e-12 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTTCA TTCCCCTGCT CTGCCTTCTT CTAGCTTTTG TGTTCTGCAA TTACGCCGGT 
GGCGCGGACC TGCCCTCCTC CTTTGACCTG CGCAACATCG ACGGACGCAG CTATATTGGG
CCGGTGCGCA ACCAGAAAAA GTGTGGCAGT TGCTGGTCCT TCGGCACCCT GGCCGCCGCC
GAAAGCACCT GGAACCGGGT CCATGGCCTG TATGACGACC AGGCCATCGA CTTTTCCGAA
GCCTTTTTGA CCTGGAGCCT GAGTCCTCTG TACGATGGCC TGCATGGGTG CGATGGCGGC
AGTCTGGATC TCCAGCAAAA CACGGCACTG ATCGAGTATG GCGTACCACT TGAATCGGAC
TTTCCCTACA CCATGACAGA TCCAGGCAGC GATCTGCACT GGGATGCAAC GCGCTATAGT
TTTCTGGACT GGTACCGCAT TCCCCCCAGC GACATCGAAA CCACGCGCCG CATTCTCTAC
CACATTGGAG CGGTTACCGC CGGCGTACTG GTCGAAGATG ACTTTTACGC CTACTCCGGC
GGCATCTTGA CCAACCAAAA CACCGCCATC AACAATCCCT TGCCTTACGA ATCCTCCGCC
AACCACCTTG TTGCCCTGGT GGGCTGGAAC GATGAACCCG GGGACGACGG TCTAGGCTAT
TGGATTTTAC GTAACAGCTG GTCTGAAAAC TGGGGGGATA ACGGCTATGT AAACATCCGC
TATACCACCG CCAAAGTGGC GCTGCACAGC GCCTATATGA TGTTGGAACC CTGGAGCGGT
GCGAATGTCG TCCTGGAAAA TCAAGAAGAC CTGTCGGCTA CTCCCTGGAG TGCCGGCGGT
ACACTTAACG CTCACGGCTT GGACCTGTGG GGCGGCGCCG CCAGTAGCGT AACCAACCGG
GGAACCATCC TGGCCGAAGC ATACGCTGAA ACCGAACTGG CCACGGCGCG CGGCGTCTAT
CTGTGGGGTG GACCCGAAGG CCAGGTGATT AACGAGAAGC TTATAGGAGC TTTGGCCTCC
AGCGACAACA ACCAGGCCAG CGCCTATGCC ATCTGCCTGC AGGGCGGTCT TGTGGATAAT
AGCGGCCAAC TGCTCGCCCT GGCCACAAGC CATGCCGACC AGGCACTGGC CTTCGGCGTA
TGGGCGGCCA ACGGTGGCAA TCCCCTGGAA ATCCGCAACA ACGGACTGGT GCTGGCATGG
GCTCAAAACA GCGGCACCAA TGCCGGCTAC GGCATCTGGG CCGACAGTCG CTACCTGACC
GAAGTCACCA ACAGCGGCAG TATCTTCGCC TTTGCCGACA CTTACGCTGT CGGTGTGCTG
TTGAGCGGAG GTCCTGCTGT ACTGAACAAC AGCGGCACCA TCCTGGCGGC AGCGTCCCTG
GAAGATCCGG ACATATTATC CGGCACCAGT ATCGGCCTGC TGGCTACCAA GAAAACAACG
ATTCTCAACA GCGGCACCAT CAGCGGCGCT TATGCCTCCA TAAAATCCGA GGACGACACC
TTACTCGTGC TGGAAACCGG ATCCGATCTG ATCGGAACGG CCTATCTCAA AGGAAACAGC
GATGTCGTTT GGCTAAACGG CAGCGGCAGT GAAGATACGT CCTTTTACGG TGTGGAAACC
CTGCTGATGG CCGGCGACGA CTGGTCCCTG AGCGGCGCCT CAGCCTTCGG CAGCATCGAG
GTCGCCCTGG GGCGGCTGGG GGTGGACGGC GCATTGGCGG GTGAGACATC GGTCCTGGCA
GAGGGCATCC TCGGCGGCAA CGGTTCGGTA ACCGGCACGG TCGCCAACGG CGGCACGGTC
GCGCCGGGCC ATTCCGTCGG CCATCTCACC GTTGTCGGCG ACTACGCGCA GACCGCCGAT
GGCACCCTGG AGATCGAAAT CGGCGACGGC ATCGCCGACC TGCTTACCGT CACCGGCACC
GCCGATCTGG CCGGCACCCT GCTGATACTG CCCGACGGCT ACGCCACCGG CGGCAGCTAT
ACCTTCCTGG AGGCGGGAAC CATCGCCGGC GCCTTCGAAA CACTGACCAG CGCCGCGGTG
CTCTCTGTCA CCCTGGACGA TGCCACCCCC GGCAGCCTGA GCCTCGATGT GACGCGCAAC
AGCTACACAG CACTGTCCTC GCCGCACAAC CGGGGTCTGG CCAGCACCCT GGACGGTCTG
CGGTCCACCG CCGACGGCGA TTTCGGTTCC TTGCTCGACA GCCTCGATCT GGCCCTGAGT
CAGTCGGCGC TCAACGACGC CCTCGCCTCT CTGACCCCGC GCATCCACGG TCTGGCCAGC
ACCGTGATCC TGAACGATGC GCAAACCCGC CTGGGCGATC TGCGCCGCCG CCTGCAGCGC
GTCGATCCGG ACATGCAGCC GGAAGGAAAG CCCTCCGCCT GGTTCGAGAT CCTCGGTGAA
GACAACCGCT ACGGCAGCGA TGGCGGGTAT TTCGGCGCAC GGGAAGAACT TTACGGACTG
CTGCTGGGGA TGCACCGATC AACCTCCGGT GGCCTGACCC TGGGCGTGGC GGCCGCCGTG
TCGGAAAGCC GCCTGGACGG CCGGGACGGC AACGACGACA GCGAAATCAA AAGCCAGCAG
GGATACCTTT ACGCGGCCTG GCGCGAGCCG CGCCGCGCCG ACGGCATGCA TATGGAGGCC
GTTGTGGGCG GTGGTCTCTG TCAGCTGGAC ACCGATCGCT CCATCCCGTT CGCCGGCCGC
AGACCCCACA GCGAGCATGA CGGCAGCCTG ATCGGCGCCA CCTTCAACGG CGGCTATACG
CTAGACGTTA ACGGATGGAT CATCGATCCC GGCGCCGGGC TGAGCTTCGT GCATCTGCGC
GAAGAGAGCT TTCGCGAATC CGGCGCCAAC AGCGCCGACC TGAAGATCGC GGCGCGCGAC
AACGATTCCC TGCAAAGCCA GCTGGGTGTG CGTTTAAGCC ATCCGTTGCG GCTCGACACC
CTGACCCTGC AACCGGAACT GCGTATCGAA TGGCAGCACG AATTCAATCG CAAGACCGAA
GCGCTGCAGG CCCGCCTGGC CGGCGGCGAC ACGTTTATCA CACCGGGCCG CGACCTGGCC
GGCGACGGCC TGCTGCTCGG CGCCTCGCTG CGGGCCCGGA TGTCCGACAA CGTCTTCGGA
ATGCTGGACT ACACCTGCGA CCTGCAGAGC CACGGCGCCG CAGGTCACGC CCTGCGTCTG
CACCTGGCAG TGATGTTCTG A
 
Protein sequence
MRFIPLLCLL LAFVFCNYAG GADLPSSFDL RNIDGRSYIG PVRNQKKCGS CWSFGTLAAA 
ESTWNRVHGL YDDQAIDFSE AFLTWSLSPL YDGLHGCDGG SLDLQQNTAL IEYGVPLESD
FPYTMTDPGS DLHWDATRYS FLDWYRIPPS DIETTRRILY HIGAVTAGVL VEDDFYAYSG
GILTNQNTAI NNPLPYESSA NHLVALVGWN DEPGDDGLGY WILRNSWSEN WGDNGYVNIR
YTTAKVALHS AYMMLEPWSG ANVVLENQED LSATPWSAGG TLNAHGLDLW GGAASSVTNR
GTILAEAYAE TELATARGVY LWGGPEGQVI NEKLIGALAS SDNNQASAYA ICLQGGLVDN
SGQLLALATS HADQALAFGV WAANGGNPLE IRNNGLVLAW AQNSGTNAGY GIWADSRYLT
EVTNSGSIFA FADTYAVGVL LSGGPAVLNN SGTILAAASL EDPDILSGTS IGLLATKKTT
ILNSGTISGA YASIKSEDDT LLVLETGSDL IGTAYLKGNS DVVWLNGSGS EDTSFYGVET
LLMAGDDWSL SGASAFGSIE VALGRLGVDG ALAGETSVLA EGILGGNGSV TGTVANGGTV
APGHSVGHLT VVGDYAQTAD GTLEIEIGDG IADLLTVTGT ADLAGTLLIL PDGYATGGSY
TFLEAGTIAG AFETLTSAAV LSVTLDDATP GSLSLDVTRN SYTALSSPHN RGLASTLDGL
RSTADGDFGS LLDSLDLALS QSALNDALAS LTPRIHGLAS TVILNDAQTR LGDLRRRLQR
VDPDMQPEGK PSAWFEILGE DNRYGSDGGY FGAREELYGL LLGMHRSTSG GLTLGVAAAV
SESRLDGRDG NDDSEIKSQQ GYLYAAWREP RRADGMHMEA VVGGGLCQLD TDRSIPFAGR
RPHSEHDGSL IGATFNGGYT LDVNGWIIDP GAGLSFVHLR EESFRESGAN SADLKIAARD
NDSLQSQLGV RLSHPLRLDT LTLQPELRIE WQHEFNRKTE ALQARLAGGD TFITPGRDLA
GDGLLLGASL RARMSDNVFG MLDYTCDLQS HGAAGHALRL HLAVMF