Gene Pcar_0024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0024 
SymbolrfaD 
ID3723123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp26990 
End bp27937 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content57% 
IMG OID637749603 
ProductADP-L-glycero-D-mannoheptose-6-epimerase 
Protein accessionYP_355457 
Protein GI77917642 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value0.495493 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTATTG TTACCGGCGG AGCCGGTTTT ATTGGCAGCA ATATCGTACA GGCCCTCAAT 
GCGCGCGGGC GAGAAGATAT CCTGGTCGTC GACGATTTGA CCGACGGTAC CAAATTCGCG
AATATCGCCG ATGCGCGAAT CTGCGATTAT CTCGATAAGG ATGAATTTCT CCGGCGCATC
GCTTCCGGCG ACAGCTTCGG TGACCGGATT GAAGCCATCA TTCATCAGGG CGCCTGTTCG
ACGACCACCG AGTGGGACGG ACGTTACATG ATGGAGAACA ATTACGCCTA CTCCAAGACC
TTGCTGCATT ACTGTCTGGA GCGGCGCATT CCTTTTCTGT ATGCGTCCAG CGCGGCGACT
TACGGCGGTG GCCAGGTGTT TTGCGAGGAG CCGCAGTACG AGCGGCCTCT CAACGTCTAC
GGCTATTCCA AGGCGCTGTT CGATCAGTAC GTGCGGCGTG TGCTGCCCAC CGCCGACAGC
CAGGTAGCGG GTTTTCGCTA TTTCAATGTC TATGGGCCGC GGGAGCAGCA CAAAGGGAGC
ATGGCCAGTG TCGCCTTCCA TTTGCGCAAC CAGTTGCTCA AGGACGGCAG CGTCAATCTG
TTTGAAGGGT GCGACGGATA CGGCGACGGC GAGCAGCGGC GTGATTTTAT CTATGTCGGC
GATGTGGTCG ACGTCAATCT GTGGTTTCTT GACCACCCTG AGGTATCGGG TATTTACAAT
GTCGGTACCG GACGCAGCCA GACCTTTAAC GATGTCGCCC ACGCGGTGCT GAAGGCTCAC
GAGGGGGGCG AATTGCAGTA CGTGCCGTTC CCCGAGCATC TCAAGGGTCG CTATCAGAGT
TTTACCGAAG CGGATCTGAC CCGTTTGCGC GGTGCCGGTT TTGACGGCAG CTTCCTGACC
GTCGAGGAGG GCGTGGCGCG TTACATGGAA TGGCTGCAGC AGAACTGA
 
Protein sequence
MLIVTGGAGF IGSNIVQALN ARGREDILVV DDLTDGTKFA NIADARICDY LDKDEFLRRI 
ASGDSFGDRI EAIIHQGACS TTTEWDGRYM MENNYAYSKT LLHYCLERRI PFLYASSAAT
YGGGQVFCEE PQYERPLNVY GYSKALFDQY VRRVLPTADS QVAGFRYFNV YGPREQHKGS
MASVAFHLRN QLLKDGSVNL FEGCDGYGDG EQRRDFIYVG DVVDVNLWFL DHPEVSGIYN
VGTGRSQTFN DVAHAVLKAH EGGELQYVPF PEHLKGRYQS FTEADLTRLR GAGFDGSFLT
VEEGVARYME WLQQN