| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2412 |
|---|
| Symbol | pepF |
|---|
| ID | 3720009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 1041640 |
|---|
| End bp | 1043460 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640070593 |
|---|
| Product | oligoendopeptidase F |
|---|
| Protein accession | YP_352474 |
|---|
| Protein GI | 77462970 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0632065 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTGC CCCTGCCCCG CCCGGTCTTC GACGCCAACG CCAGCGCCGG GGGCCTCGGG
AACCTGCCCG ACTGGGATCT GCGCGACCTC TATCCCACCC CGGACGGTCC GGAATTCCGC
GACGACATGG CCTGGCTCAA GGAGGCCTGT GCAGGCTTCG CCGCCAGCTA CGAGGGCAAG
CTTGCGAGCC TCGATGCGGC GGGCCTCCTC GCCTGCATCG AAGCCTACGA GAAGATCGAC
ATCGTGGCCG GGCGGCTCAT GTCCTACGCC GGCCTGCGCT ATTACCAGAA CACGATGGAC
AGCGAGCGCG CCAAGTTCAT GGCCGACGCG CAGGACAAGG TGACCGACTA CACGACCGCG
CTCGTCTTCT TCAGCCTCGA GTTCAACCGG CTGGAGGATG CCCATCTCGA AGCCCGTCTG
GCCGAGAGCG CGGCGCTCGC CCGCTACAAG CCCGTCTTCG ACCGGATGCG CGCCATGCGC
CCGCACCAGC TTTCGGACGA GCTGGAACGC TTCCTCCACG ACGAATCGAC CGTCGGCGCC
GCCGCCTGGA ACCGTCTCTT CGACGAGACG ATGGCGGGCC TCACCTTCAC GCTCGAGGGC
GAGGAGCTGA ACCTCGAATC CACCCTGAAC CTGCTGACCG ACCCCGAGCG GCCGCGCCGC
GAGGCCGCCG CCCGCGCTCT GGCCGAGGTC TTCGGCCGCA ACATCAAGCT CTTCGCGCGG
GTGCACAACA CGCTCGCGAA GGAGAAGGAG ATCCACGACC GGTGGCGCAA GATGCCCACG
CCGCAATACG GCCGGCACCT CGCGAACCAT GTCGAGCCCG AAGTGGTCGA GGCGCTGCGC
AATGCGGTGG TCGCGGCCTA TCCCAAGCTC TCGCACCGCT ACTACCGGCT GAAGGCCAAA
TGGCTGGGCC TCGACAAACT GCAGGTCTGG GACCGCAACG CCCCGCTGCC CACCGAAACG
CCGCGGCTCG TGGGCTGGGA CGAGGCGCAG TCGACGGTGA TGGAGGCCTA TTCCGCCTTC
GATCCGCGGA TGGCCGAGAT CGCGAAACCC TTCTTCGAAA AGGGCTGGAT CGATGCGGGC
GTGAAGCCCG GCAAGGCGCC CGGCGCCTTC GCCCATCCGA CCGTGACGAC CGTCCATCCC
TATGTGATGC TGAACTATCT CGGCAAGCCG CGCGACGTGA TGACGCTCGC GCATGAGCTC
GGCCACGGCG TCCATCAGGT GCTGGCGGCG GGACAGGGCG AACTCCTCTC CTCGACGCCG
CTCACGCTGG CCGAGACGGC GAGCGTCTTC GGCGAGATGC TGACCTTCCG CCGGCTCCTC
GATGCGGCCA GAACCCCGGC CGAGCGCAAG ACGCTGCTCG CCGGCAAGGT CGAGGACATG
ATCAACACGG TCGTGCGCCA GATCGCCTTC TACGATTTCG AGTGCAAGCT GCACGAGGCG
CGCCGGCAGG GCGAGCTCAC GCCCGAGGAC ATCAATGCCC TCTGGATGAG CGTGCAGGCC
GAAAGCCTCG GCGATGCGTT CGAGTTCATG GAGGGCTACG AGACCTTCTG GTCCTACGTT
CCGCATTTCG TCCATTCGCC CTTCTACGTC TATGCCTATG CCTTCGGCGA CGGGCTGGTG
AATGCGCTCT ATGCCGTCTA TGCCGAGGGC ACTCCGGGCT TTCAGGACAA GTATTTCGAG
ATGCTCTCGG CGGGCGGCTC CAAGCATCAC AAGGAGCTTC TCGCCCCCTT CGGCCTCGAT
GCGAGCGACC CGACCTTCTG GGACAAGGGG TTGAGCATGA TCGCAGGCTT CATCGACGAG
CTCGAAGCCA TGGACGATTG A
|
|---|
| Protein sequence | MTLPLPRPVF DANASAGGLG NLPDWDLRDL YPTPDGPEFR DDMAWLKEAC AGFAASYEGK
LASLDAAGLL ACIEAYEKID IVAGRLMSYA GLRYYQNTMD SERAKFMADA QDKVTDYTTA
LVFFSLEFNR LEDAHLEARL AESAALARYK PVFDRMRAMR PHQLSDELER FLHDESTVGA
AAWNRLFDET MAGLTFTLEG EELNLESTLN LLTDPERPRR EAAARALAEV FGRNIKLFAR
VHNTLAKEKE IHDRWRKMPT PQYGRHLANH VEPEVVEALR NAVVAAYPKL SHRYYRLKAK
WLGLDKLQVW DRNAPLPTET PRLVGWDEAQ STVMEAYSAF DPRMAEIAKP FFEKGWIDAG
VKPGKAPGAF AHPTVTTVHP YVMLNYLGKP RDVMTLAHEL GHGVHQVLAA GQGELLSSTP
LTLAETASVF GEMLTFRRLL DAARTPAERK TLLAGKVEDM INTVVRQIAF YDFECKLHEA
RRQGELTPED INALWMSVQA ESLGDAFEFM EGYETFWSYV PHFVHSPFYV YAYAFGDGLV
NALYAVYAEG TPGFQDKYFE MLSAGGSKHH KELLAPFGLD ASDPTFWDKG LSMIAGFIDE
LEAMDD
|
|---|
| |