Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_1481 |
Symbol | OppA |
ID | 3718717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_007493 |
Strand | - |
Start bp | 67142 |
End bp | 68731 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640069629 |
Product | ABC oligopeptide transporter, perplasmic substrate-binding protein OppA |
Protein accession | YP_351524 |
Protein GI | 77462020 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.869658 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTCT TCTCGCTCCG AGCCGGCGCC TGCGCGCTGG CGCTGATGGC CGGCACGGCA GGCATGGCCG CGGCTCAGGT GACCATCGTC CGCGGCAACG ACACCGACCC TGCGACGCTC GACCATCACC TGACCTCGAC CGTCGCCGAG AGCAGGATCA TGAACGACCT CTACGAGGGG CTCGTGGTGC AGGACGCGCA GGCGAAGGTC GTGCCCGGCG TGGCGGAAAG CTGGGAGATC TCGGAGGACG GTCTCACCTA CACCTTCAAG CTCCGCGACG ATGCGAAGTG GTCGAACGGA GATCCCGTCG TGGCCGAGGA TTTCGTCTTT GCCCTGCGGC GCATCATGAC CCCGGCGACG GCGGCGGTCT ATGCCAACAT CCTCTACCCG ATCGCCAATG CGGAGGCCGT CGCCACCGGC GCCAAGCAGC CCGAGGAGCT GGGCGTCGAG GCGGTGGACG CGCACACGCT GAAGTTCACC CTGAACGCGC CCACGCCCTA TTTCCTCGAA CTCCTGACGC ACCAGTCCTC GCTGCCGATG CACCGGGCGA CCGTCGAGGC GGAAGGGTCG AACTTCACCA AGCCCGGCGT GATGGTCACG AACGGCGCCT ACAAGCTGGT CAGCTTCGTG CCCAACGACC GCATCGTGAT GGAGAAGAAC GAGCATTTCC ACGATGCGGC CAATGTGGCC ATCGACCGCG TGGAATGGGT GCCCTTCGAG GACCGCTCGG CCTGTCTGCG CCGCTTCGAG GCGGGCGAGG TGCAGATGTG CACCGACGTT CCGGCCGAAC AGATGGCCTA CATGCGCGAG AACCTGAAGG ACGAGCTGCA TATCGCGCCC TACCTCGGCA CCTACTACCT GCCGGTGAAG GGCGCCGACG GCAGCCCGCT GAAGGACAAG CGGGTGCGGC AGGCGATCTC GATGGTGCTG GATCGTGACT TCATCGCCGA GGAGGTCTGG CAGGAAACGA TGCTGCCCGG CTATTCGATG GTGCCTCCGG GCATCTCGAA CTATGTCGAG ACCCCGCCCG CGCTCGACTA TGCCGACGAG GATCTGCTCG ACCGCGAGGA CAAGGCCAAG GCGCTGCTCG AGGAAGCGGG CGTGGCCGAG GGCAGCCTCA CCGTGCAACT CTCCTACAAC TCGTCCGAGA ACCACCGGAA CACGATGACG GCCATCGCCG ACATGCTGAA GAACATCGGC ATCAACGCGA CGCTGAACGA GATGGAAGGC ACGAACTACT TCAACTACCT GAAGGAAGGC GGCGCCTACG ACATCGTGCG CGCGGGCTGG ATCGGCGACT ATTCCGACCC GCAGAACTTC CTGTTCCTGT TCGAGGGCGG CGTGCCCTTC AACTATCCGC GCTGGGAGAA TGCCGAATAC GACGCGCTGA TGGACAAGGC GGCCGTCACG CAGGATCTCG GGCAGCGCGC GCAGATCATG GCCGATGCCG AGACGATCCT GCTCGACGAG GTGCCGGCGA TCCCGCTGCT GACCTATTCC TCGCGGGCGC TCGTGTCCGG CAAGGTGCAG GGCTACGCGG ACAACCTGCC CGACGTCCAC CTCACCCGCT GGCTCTCGCT CGCCGAGTAA
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Protein sequence | MTLFSLRAGA CALALMAGTA GMAAAQVTIV RGNDTDPATL DHHLTSTVAE SRIMNDLYEG LVVQDAQAKV VPGVAESWEI SEDGLTYTFK LRDDAKWSNG DPVVAEDFVF ALRRIMTPAT AAVYANILYP IANAEAVATG AKQPEELGVE AVDAHTLKFT LNAPTPYFLE LLTHQSSLPM HRATVEAEGS NFTKPGVMVT NGAYKLVSFV PNDRIVMEKN EHFHDAANVA IDRVEWVPFE DRSACLRRFE AGEVQMCTDV PAEQMAYMRE NLKDELHIAP YLGTYYLPVK GADGSPLKDK RVRQAISMVL DRDFIAEEVW QETMLPGYSM VPPGISNYVE TPPALDYADE DLLDREDKAK ALLEEAGVAE GSLTVQLSYN SSENHRNTMT AIADMLKNIG INATLNEMEG TNYFNYLKEG GAYDIVRAGW IGDYSDPQNF LFLFEGGVPF NYPRWENAEY DALMDKAAVT QDLGQRAQIM ADAETILLDE VPAIPLLTYS SRALVSGKVQ GYADNLPDVH LTRWLSLAE
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