| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1128 |
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| Symbol | dapE |
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| ID | 3720826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | - |
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| Start bp | 2892083 |
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| End bp | 2893225 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640072358 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_354213 |
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| Protein GI | 77464709 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCCATCG ATCCCGTCGC GCTGACCGCC GATCTCGTCC GCTGCCCCTC GGTCACGCCC
GAGGAGGGCG GCGCGCTCGA CCTGATCGAG CGGATCCTGA GCGGGGCGGG CTTCGACTGC
ACCCGCGTGG ACCGCAACGG GGTGCCGAAC CTCTTCGCCC GCTGGGGCCG GAAGGGCGCG
AACCGGACCT TCGGCTTCAA CGGCCATACC GATGTGGTGC CGGTGGGCGA TGCCGCCGCC
TGGACCCGCG ATCCGTTCGG CGGCGAGATC GCCGACGGCT GGCTCTGGGG GCGCGGGGCC
ACCGACATGA AGTCGGGCGT CGCGGCCTTC GTGGCAGCGG CGGTCGATTT CGTGCAGGAG
ACCCCGCCCG ACGGGGCGGT GGTCCTGACC ATCACCGGTG ACGAGGAGGG CGACTCGACC
GACGGCACGG TCGCGCTTCT CGACTGGATG GCGGCGGAGG GCGAGGCCAT GTCGGTCTGC
CTCGTCGGAG AGCCCACCTG CCCCGAGCGG CTGGGCGAGA TGATGAAGAT CGGCCGCCGC
GGTTCGATGA CGGCCTTTTT CACCGCCCGC GGCGTGCAGG GCCATTCGGC CTATCCGCAT
CGGGCGAAGA ACCCGGTCGC CGCGCTGGCG CGGCTGATCG ATCGGCTGTC CTCGCACGAT
CTCGACTATG GCACCGAGCA TTTCGATGCC TCGACGCTGG CCGTGACCAC CTTCGACACC
GGCAACCCGG CCACCAACGT GATCCCGGCT CTCTGCCGCG CGACGGTGAA CATCCGTTTC
AACGATGCCC ACAGCGGTGC GAGCCTGACC CGCTGGCTGG AGGAGGAGGC CGCCCGCGTC
GCGGCTGACA CCGGCGTCGA GATTGCGCTC AGCGCCAAGA TCTCGGGCGA GAGCTTCCTC
ACGCCGCCGG GCGAGCTTTC CGAACTGGTG GCCCGCGCGG TCGAGGCCGA GACCGGCCTG
CGGCCCGAGC CCTCGACCTC GGGCGGCACC TCGGACGCGC GCTTCGTGCG CGCCCACTGC
CCGGTGGTGG AATTCGGCCT TGTCGGCAAG ACCATGCATC AGGTGGACGA GCGTGTCGAA
GTCGCGCAGA TCGAACCGCT GAAGGCCATC TACCTCCGCA TTCTGAAAGA CTATTTCGCA
TGA
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| Protein sequence | MPIDPVALTA DLVRCPSVTP EEGGALDLIE RILSGAGFDC TRVDRNGVPN LFARWGRKGA
NRTFGFNGHT DVVPVGDAAA WTRDPFGGEI ADGWLWGRGA TDMKSGVAAF VAAAVDFVQE
TPPDGAVVLT ITGDEEGDST DGTVALLDWM AAEGEAMSVC LVGEPTCPER LGEMMKIGRR
GSMTAFFTAR GVQGHSAYPH RAKNPVAALA RLIDRLSSHD LDYGTEHFDA STLAVTTFDT
GNPATNVIPA LCRATVNIRF NDAHSGASLT RWLEEEAARV AADTGVEIAL SAKISGESFL
TPPGELSELV ARAVEAETGL RPEPSTSGGT SDARFVRAHC PVVEFGLVGK TMHQVDERVE
VAQIEPLKAI YLRILKDYFA
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