| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5648 |
|---|
| Symbol | |
|---|
| ID | 3717442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 6330057 |
|---|
| End bp | 6331820 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | Sodium/hydrogen exchanger |
|---|
| Protein accession | YP_351375 |
|---|
| Protein GI | 77461868 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00653645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCA TCAGCTTTAT TCAGGATCTG GCGGTGATCA TGTTGGTCGC AGGTGTGGTG
ACCGTGCTGT TCCACCGCTT CAAGCAGCCG GTGGTGCTCG GTTACATCGT CGCCGGCTTC
ATCATCGGCC CGCACACACC GCCGTTCGGC CTGATCCACG ACGAAGAAAC CATCAAGACC
CTCGCCGAGC TGGGGGTGAT TTTCCTGATG TTCTGCCTGG GCCTGGAGTT CAGCCTGCGC
AAGCTGTTCA AGGTCGGCGC CACGGCCTTC ATCGCGGCGT TCCTGGAAAT TGTCCTGATG
ATCTGGATCG GCTACGAAAT CGGCCGCTGG TTCGACTGGA ACACCATGGA TTCGCTGTTC
CTCGGCGCGA TCCTGGCGAT TTCCTCGACC ACCATCATCG TCAAGGCGCT CAACGACCTG
AAGATGAAAA ACGAGCGCTT CGCGCAGCTG ATCTTCGGCG TGCTGATCGT CGAGGATATT
CTTGGCATCG GCATCATCGC CTTGCTGTCG AGCATTGCGG TCAGCGGCAC GGTGAGCTCC
GGCGAAGTGT TTTCCACGGT CGGCAAGCTC TCGCTGTTCA TGATCGTCGC CCTGGTAGTC
GGCATTCTGC TGGTGCCGCG TCTGTTGGCT TACGTCGCCA GGTTCGAAAG CAACGAGATG
CTGCTGATCA CCGTGCTGGG CCTGTGTTTC GGTTTCTGCC TGCTGGTGGT CAAACTCGAG
TACAGCATGG TGCTCGGGGC GTTCCTGATC GGCGCGATCA TGGCCGAGTC GCGGCAACTG
CTGAAAATCG AGCGCCTGAT CGAGCCGGTT CGCGACCTGT TCAGTGCGAT CTTCTTCGTC
GCCATCGGCC TGATGCTCGA TCCGATGATC CTTCTGCAAT ACGCGTGGCC AATTGCGGTA
ATCACTGTCG CCGTGGTGCT GGGCAAGATG CTGTCCTGCG GCCTCGGTGC CTTTATCGCC
GGTAATGACG GACGCACCTC ACTGCGGGTC GGGATGGGGC TTTCGCAGAT TGGTGAATTC
TCCTTCATCA TCGCGGCGCT GGGGATGACC CTGCAGGTCA CCAGCAACTT CCTGTATCCG
GTGGCCGTGG CGGTTTCGGT GATTACCACG TTGCTGACGC CGTACCTGAT CCGGGCTGCC
GATCCGCTGT CGATCAAGCT GTCAGCCGCG ATGCCGCAGC GCCTCGGTCG AGTGTTCGGA
ATGTACGGCG AATGGCTGCG TAGCATTCAG CCGCAGGGTG AGGGCGCGAT GCTGGCGTCG
ATGATCCGGC GGATCCTGCT GCAGGTCGGG GTCAATCTGG CGCTGGTGAT CGCGATCTTC
TTTGCCGGCG CTTTCTTTGC CGGGCGCCTC TCGATCTGGA TGCAGGAATG GATCAGCGAC
CCAAGCTGGC AGAAGGCGTT GATCTGGGGC GGGGCGTTGC TGGTGTCGTT GCCGTTCCTG
ATCGCGGCCT ATCGCAAGCT CAAGGCGCTG TCGATGTTGC TGGCGGAGAT GGGTGTGAAG
CCGGAAATGG CCGGGCGTCA CACACAGCGA GTGCGCCGAG TGATCGCCGA AGTGATCCCG
ATCATCTCGC TGCTGGTGAT TTTCCTGCTG TTGGCAGCCT TGTCGGCCAG TATCTTGCCG
ACCAACAAGT TGCTGGTGCT GATCGCCGTG GTCGCGGCCG CCGTGGCGGC GCTGCTCTGG
CGCTGGTTCA TCCGGGTGCA CACGCGGATG CAGGTGGCCC TGCTGGAAAC CCTCGACAAC
CACAAGGAGT CGTCGGGGCA CTGA
|
|---|
| Protein sequence | MHAISFIQDL AVIMLVAGVV TVLFHRFKQP VVLGYIVAGF IIGPHTPPFG LIHDEETIKT
LAELGVIFLM FCLGLEFSLR KLFKVGATAF IAAFLEIVLM IWIGYEIGRW FDWNTMDSLF
LGAILAISST TIIVKALNDL KMKNERFAQL IFGVLIVEDI LGIGIIALLS SIAVSGTVSS
GEVFSTVGKL SLFMIVALVV GILLVPRLLA YVARFESNEM LLITVLGLCF GFCLLVVKLE
YSMVLGAFLI GAIMAESRQL LKIERLIEPV RDLFSAIFFV AIGLMLDPMI LLQYAWPIAV
ITVAVVLGKM LSCGLGAFIA GNDGRTSLRV GMGLSQIGEF SFIIAALGMT LQVTSNFLYP
VAVAVSVITT LLTPYLIRAA DPLSIKLSAA MPQRLGRVFG MYGEWLRSIQ PQGEGAMLAS
MIRRILLQVG VNLALVIAIF FAGAFFAGRL SIWMQEWISD PSWQKALIWG GALLVSLPFL
IAAYRKLKAL SMLLAEMGVK PEMAGRHTQR VRRVIAEVIP IISLLVIFLL LAALSASILP
TNKLLVLIAV VAAAVAALLW RWFIRVHTRM QVALLETLDN HKESSGH
|
|---|
| |