Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5637 |
Symbol | |
ID | 3717470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 6312235 |
End bp | 6315192 |
Gene Length | 2958 bp |
Protein Length | 985 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_351364 |
Protein GI | 77461857 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.217038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.176654 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTTCC CGCCCCAGCG CCTGTCGTTT GCCATTGCCC TGCTGATCGC CACCAGCGCC GCCCACGGCA AGACCGTGCA GATCGACACC GCCACCACCG CGTCGCAAAC ATTGGGCGGT AAAGACACAC TGACGATTTC GGCGCCGGGC AGCATCACCA ACAGCGGCAA GGCTGTGAGC CTGAAGGACG GCACCAGCGG CGTCGGTGTG ATCATCGATA ACGCCGGCAA GATCATTTCC AGCGGCGGCA GGGCCATCGA CAGCAGCGGC GACCTGACCC AGGCACGCAA CTACGCCATC TATAACCGCA GCGGCGGGCA GATTCTCGGT TCCAACGACG CGATTCGCAT CGACAGCAAC TTCGTCAGCG GCAGTCTGTT GATCGACAAC AGCGGCACCA TTCGCTCAAT CACCGGCCAG GGGCTGGATC TGGATGCGTT GCGCAGTGAC GGGGTGAAAA CCACGATCAT CAACCGCGCG GGCGGGCTGA TTCGTGGCGA CGCCAGCGAC GGCATGAAAA CCGGCGCCAA CGCGACCATC AGCAACTACG GCGAGATTTC CACTGGCGAC TCGCACAACG CCGATCAGAA GTTCGACGGC ATCGATATCG ACACCGCGAC CGGCGTCAGC GTGACCAACT ACGGCGTGAT TTCCGGCGGC CGGCATGGCA TCACCACCGA CCTCGGAGCG ACGCTGGTCA ACTACGGGCA AATCACCGGG CGCAACGGCT CCGGTTTCGG TTCCGACGGC GACGGCACGG TGATCAACCA CGGCACCATC ACCGGAGCAT ATTCCGGGTT GCAAGCCAAT GGCGACGGCG ATGGTGTGGA CATCGACAAG ATCGCCCACA TCGAAAACTA CGGCACCATT CAGGGTGTCG GCGCTGGTGG TGTGGACAAG GGCGGTTTTG CCAATGGCAG TGAAGGCATC GCGCTGGGCG GCGGTTACAT TCTTAACGCC AAGGATGCGC TGGTCAGCGG TGCCAACAGC GCCATTCTGG TGGATGACGG CAGCGGTGGT TCGGGGCTGG CAGCCACCTC GCTGGAAAAC TACGGCACGA TCCAGGGCCT CGACGGTTTC GGCGTGAAGT TCGTCGGTGA ATTCGCCGAC AGCGTGATCA ACGGCGGCGC CATCAGCGGC AGCAACGGTC TGGCGCTGGA CCTGGGTGGC GGCAATGACA GCCTGACCCT GCGCAGCGGC AGCCGCTTCG TAGGTACCGT CGATGGCGGC AGCGGTTATG ACCGCGTAGT GATGGACGAT GCGGCGGGCG GCAGCTTCGG TGCCAGCCGC AACTTTGAAT GGCTGGAAGT CAAACAAGGC GCCTGGACGC TCACCGGCAG CGGCGACTTC AGCGACGGGG GTGCCGTGCG CAACGGCGCC ACGTTGGTCA ACCAGGGTGG CATCGCCGGC AACCTGATAG TGGACGCCGG TGGTGTGTAT GCGGGTGGTG GTTCGGTGGG CAACCTCAAC GTCAATGGCA CGTTGCGCAC CGACACCCGC TTCGGCACCG CGACCGTCGT GCACGATTTG AACATGAGCA GCACATCCAC CCTCGCCTAC GGCGTCAACG CCGATGGCAG CAGCGCGCCG GTTCAGGTCG GCGGCACGGC CAACCTCAAT GGCGCAACGC TGGCGGTCAA TCCCGGCAGC GGCACCTATC CGTGGCAGAG CCATTACACG GTGCTGCAAG CTGCGCGGGT CAACGGCACA TTCGGTGCAG TCACCAGCGA CTACGCCTTC CTCACGCCGA CCCTCGCTTA CACGCCAACG CAGGTCGACC TGACTTACAC CCGCAATGAC GTGGCCTTCA ATGAATTCGC CGCCACCGGC AACGGCAGCA ACGCCGCCAA CAGCCTGGCC TCGATCGGCA AGAACAATGC GCTGTACAAC GCGTTGCTCA ACACCACTCA AAGCAGTGCA GGCGCGGCCA TCGAGCAACT GGCCGGCGCC AGCAACGCCA ACCTGACCAG CGCCACCCTC GGCGCCAGCA GCCAGGTCGG CAGCAGCATG CTCTCGGCGA TGCAGCAAAT CGGTGGCAGC CCAGGCTTGC TGGTCGGCCT CGATCAGCGT GATACGCCGA TCCTCGCGGC CAACGGCGTA CCGTCCGAAG CGCGAAACCT GAATGATCCG AACGCCCGTG GCCGGCTCTG GCTGCAGGCC ATCGGCGGCT ACGGCAAGCT CGATGGCGAA CACGGCAGCA GCGGCCTGGA ACAACGCACC AAAGGCAGCG TGCTCGGTGC CGACTGGGCA CTGAATCCGC AATGGCGTCT GGGTGTGCTC GGTGGCTATT CGAAGACCGA TCTGGATGCC ACCGGCGTCG ACGGCAATGT CGAGAGCTGG CACGCCGGTG TTTATGCGCA GCATCAAAAC GGCCCGCTGG CCTTGCGCCT GGGCGCGGCT TACAGCGGTC ATCAGGGCGA AAGCAAGCGC ACCATCGCGT TCAACGGTTT CAGCGACCGC CCCAAAGGCG ATTACGATGC CGACAGCCAG CAAGCCTTCG CCGAACTCGG CTACGCCATG GGCACTGGCC GGCTCAGCGC CGAACCGTTC GCCAGCCTCG GCTATCAGCG TTATCACCGC GAGCGCTATC AGGAAAAGGG CGGTGCGGCG GCGTTACAAG TTGACAGTCA GACTCAGGAC AACTTCAGCA GCACCTTCGG CCTGCGCCTG GCGCACCTCG GCTCGCTGGA CAATGGCATG AGCTTCACCC CGCGAATGGC CGCCGGCTGG AAGCACACCT ACGGCGATGT CAGCAGCTCG ACCCGTCAGG CGTTTGTGGT CGGCGGCACG GCGTTCAGTG TCGATGGCAG CTCGCTGGAT CGTGACAGTC TGGTGCTGGA AGCAGGGCTG GATCTTGGTA TTTCCGCGCG GCATACGCTG GGCTTGGGAT ACAGCGGCGA GATTGGCAGC AACAGCCGTA ATCACGGGTT GATCGGGCAA TGGCAGATGA GTTTTTGA
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Protein sequence | MPFPPQRLSF AIALLIATSA AHGKTVQIDT ATTASQTLGG KDTLTISAPG SITNSGKAVS LKDGTSGVGV IIDNAGKIIS SGGRAIDSSG DLTQARNYAI YNRSGGQILG SNDAIRIDSN FVSGSLLIDN SGTIRSITGQ GLDLDALRSD GVKTTIINRA GGLIRGDASD GMKTGANATI SNYGEISTGD SHNADQKFDG IDIDTATGVS VTNYGVISGG RHGITTDLGA TLVNYGQITG RNGSGFGSDG DGTVINHGTI TGAYSGLQAN GDGDGVDIDK IAHIENYGTI QGVGAGGVDK GGFANGSEGI ALGGGYILNA KDALVSGANS AILVDDGSGG SGLAATSLEN YGTIQGLDGF GVKFVGEFAD SVINGGAISG SNGLALDLGG GNDSLTLRSG SRFVGTVDGG SGYDRVVMDD AAGGSFGASR NFEWLEVKQG AWTLTGSGDF SDGGAVRNGA TLVNQGGIAG NLIVDAGGVY AGGGSVGNLN VNGTLRTDTR FGTATVVHDL NMSSTSTLAY GVNADGSSAP VQVGGTANLN GATLAVNPGS GTYPWQSHYT VLQAARVNGT FGAVTSDYAF LTPTLAYTPT QVDLTYTRND VAFNEFAATG NGSNAANSLA SIGKNNALYN ALLNTTQSSA GAAIEQLAGA SNANLTSATL GASSQVGSSM LSAMQQIGGS PGLLVGLDQR DTPILAANGV PSEARNLNDP NARGRLWLQA IGGYGKLDGE HGSSGLEQRT KGSVLGADWA LNPQWRLGVL GGYSKTDLDA TGVDGNVESW HAGVYAQHQN GPLALRLGAA YSGHQGESKR TIAFNGFSDR PKGDYDADSQ QAFAELGYAM GTGRLSAEPF ASLGYQRYHR ERYQEKGGAA ALQVDSQTQD NFSSTFGLRL AHLGSLDNGM SFTPRMAAGW KHTYGDVSSS TRQAFVVGGT AFSVDGSSLD RDSLVLEAGL DLGISARHTL GLGYSGEIGS NSRNHGLIGQ WQMSF
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