Gene Pfl01_5637 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_5637 
Symbol 
ID3717470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp6312235 
End bp6315192 
Gene Length2958 bp 
Protein Length985 aa 
Translation table11 
GC content64% 
IMG OID 
ProductOuter membrane autotransporter barrel 
Protein accessionYP_351364 
Protein GI77461857 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.217038 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.176654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTTCC CGCCCCAGCG CCTGTCGTTT GCCATTGCCC TGCTGATCGC CACCAGCGCC 
GCCCACGGCA AGACCGTGCA GATCGACACC GCCACCACCG CGTCGCAAAC ATTGGGCGGT
AAAGACACAC TGACGATTTC GGCGCCGGGC AGCATCACCA ACAGCGGCAA GGCTGTGAGC
CTGAAGGACG GCACCAGCGG CGTCGGTGTG ATCATCGATA ACGCCGGCAA GATCATTTCC
AGCGGCGGCA GGGCCATCGA CAGCAGCGGC GACCTGACCC AGGCACGCAA CTACGCCATC
TATAACCGCA GCGGCGGGCA GATTCTCGGT TCCAACGACG CGATTCGCAT CGACAGCAAC
TTCGTCAGCG GCAGTCTGTT GATCGACAAC AGCGGCACCA TTCGCTCAAT CACCGGCCAG
GGGCTGGATC TGGATGCGTT GCGCAGTGAC GGGGTGAAAA CCACGATCAT CAACCGCGCG
GGCGGGCTGA TTCGTGGCGA CGCCAGCGAC GGCATGAAAA CCGGCGCCAA CGCGACCATC
AGCAACTACG GCGAGATTTC CACTGGCGAC TCGCACAACG CCGATCAGAA GTTCGACGGC
ATCGATATCG ACACCGCGAC CGGCGTCAGC GTGACCAACT ACGGCGTGAT TTCCGGCGGC
CGGCATGGCA TCACCACCGA CCTCGGAGCG ACGCTGGTCA ACTACGGGCA AATCACCGGG
CGCAACGGCT CCGGTTTCGG TTCCGACGGC GACGGCACGG TGATCAACCA CGGCACCATC
ACCGGAGCAT ATTCCGGGTT GCAAGCCAAT GGCGACGGCG ATGGTGTGGA CATCGACAAG
ATCGCCCACA TCGAAAACTA CGGCACCATT CAGGGTGTCG GCGCTGGTGG TGTGGACAAG
GGCGGTTTTG CCAATGGCAG TGAAGGCATC GCGCTGGGCG GCGGTTACAT TCTTAACGCC
AAGGATGCGC TGGTCAGCGG TGCCAACAGC GCCATTCTGG TGGATGACGG CAGCGGTGGT
TCGGGGCTGG CAGCCACCTC GCTGGAAAAC TACGGCACGA TCCAGGGCCT CGACGGTTTC
GGCGTGAAGT TCGTCGGTGA ATTCGCCGAC AGCGTGATCA ACGGCGGCGC CATCAGCGGC
AGCAACGGTC TGGCGCTGGA CCTGGGTGGC GGCAATGACA GCCTGACCCT GCGCAGCGGC
AGCCGCTTCG TAGGTACCGT CGATGGCGGC AGCGGTTATG ACCGCGTAGT GATGGACGAT
GCGGCGGGCG GCAGCTTCGG TGCCAGCCGC AACTTTGAAT GGCTGGAAGT CAAACAAGGC
GCCTGGACGC TCACCGGCAG CGGCGACTTC AGCGACGGGG GTGCCGTGCG CAACGGCGCC
ACGTTGGTCA ACCAGGGTGG CATCGCCGGC AACCTGATAG TGGACGCCGG TGGTGTGTAT
GCGGGTGGTG GTTCGGTGGG CAACCTCAAC GTCAATGGCA CGTTGCGCAC CGACACCCGC
TTCGGCACCG CGACCGTCGT GCACGATTTG AACATGAGCA GCACATCCAC CCTCGCCTAC
GGCGTCAACG CCGATGGCAG CAGCGCGCCG GTTCAGGTCG GCGGCACGGC CAACCTCAAT
GGCGCAACGC TGGCGGTCAA TCCCGGCAGC GGCACCTATC CGTGGCAGAG CCATTACACG
GTGCTGCAAG CTGCGCGGGT CAACGGCACA TTCGGTGCAG TCACCAGCGA CTACGCCTTC
CTCACGCCGA CCCTCGCTTA CACGCCAACG CAGGTCGACC TGACTTACAC CCGCAATGAC
GTGGCCTTCA ATGAATTCGC CGCCACCGGC AACGGCAGCA ACGCCGCCAA CAGCCTGGCC
TCGATCGGCA AGAACAATGC GCTGTACAAC GCGTTGCTCA ACACCACTCA AAGCAGTGCA
GGCGCGGCCA TCGAGCAACT GGCCGGCGCC AGCAACGCCA ACCTGACCAG CGCCACCCTC
GGCGCCAGCA GCCAGGTCGG CAGCAGCATG CTCTCGGCGA TGCAGCAAAT CGGTGGCAGC
CCAGGCTTGC TGGTCGGCCT CGATCAGCGT GATACGCCGA TCCTCGCGGC CAACGGCGTA
CCGTCCGAAG CGCGAAACCT GAATGATCCG AACGCCCGTG GCCGGCTCTG GCTGCAGGCC
ATCGGCGGCT ACGGCAAGCT CGATGGCGAA CACGGCAGCA GCGGCCTGGA ACAACGCACC
AAAGGCAGCG TGCTCGGTGC CGACTGGGCA CTGAATCCGC AATGGCGTCT GGGTGTGCTC
GGTGGCTATT CGAAGACCGA TCTGGATGCC ACCGGCGTCG ACGGCAATGT CGAGAGCTGG
CACGCCGGTG TTTATGCGCA GCATCAAAAC GGCCCGCTGG CCTTGCGCCT GGGCGCGGCT
TACAGCGGTC ATCAGGGCGA AAGCAAGCGC ACCATCGCGT TCAACGGTTT CAGCGACCGC
CCCAAAGGCG ATTACGATGC CGACAGCCAG CAAGCCTTCG CCGAACTCGG CTACGCCATG
GGCACTGGCC GGCTCAGCGC CGAACCGTTC GCCAGCCTCG GCTATCAGCG TTATCACCGC
GAGCGCTATC AGGAAAAGGG CGGTGCGGCG GCGTTACAAG TTGACAGTCA GACTCAGGAC
AACTTCAGCA GCACCTTCGG CCTGCGCCTG GCGCACCTCG GCTCGCTGGA CAATGGCATG
AGCTTCACCC CGCGAATGGC CGCCGGCTGG AAGCACACCT ACGGCGATGT CAGCAGCTCG
ACCCGTCAGG CGTTTGTGGT CGGCGGCACG GCGTTCAGTG TCGATGGCAG CTCGCTGGAT
CGTGACAGTC TGGTGCTGGA AGCAGGGCTG GATCTTGGTA TTTCCGCGCG GCATACGCTG
GGCTTGGGAT ACAGCGGCGA GATTGGCAGC AACAGCCGTA ATCACGGGTT GATCGGGCAA
TGGCAGATGA GTTTTTGA
 
Protein sequence
MPFPPQRLSF AIALLIATSA AHGKTVQIDT ATTASQTLGG KDTLTISAPG SITNSGKAVS 
LKDGTSGVGV IIDNAGKIIS SGGRAIDSSG DLTQARNYAI YNRSGGQILG SNDAIRIDSN
FVSGSLLIDN SGTIRSITGQ GLDLDALRSD GVKTTIINRA GGLIRGDASD GMKTGANATI
SNYGEISTGD SHNADQKFDG IDIDTATGVS VTNYGVISGG RHGITTDLGA TLVNYGQITG
RNGSGFGSDG DGTVINHGTI TGAYSGLQAN GDGDGVDIDK IAHIENYGTI QGVGAGGVDK
GGFANGSEGI ALGGGYILNA KDALVSGANS AILVDDGSGG SGLAATSLEN YGTIQGLDGF
GVKFVGEFAD SVINGGAISG SNGLALDLGG GNDSLTLRSG SRFVGTVDGG SGYDRVVMDD
AAGGSFGASR NFEWLEVKQG AWTLTGSGDF SDGGAVRNGA TLVNQGGIAG NLIVDAGGVY
AGGGSVGNLN VNGTLRTDTR FGTATVVHDL NMSSTSTLAY GVNADGSSAP VQVGGTANLN
GATLAVNPGS GTYPWQSHYT VLQAARVNGT FGAVTSDYAF LTPTLAYTPT QVDLTYTRND
VAFNEFAATG NGSNAANSLA SIGKNNALYN ALLNTTQSSA GAAIEQLAGA SNANLTSATL
GASSQVGSSM LSAMQQIGGS PGLLVGLDQR DTPILAANGV PSEARNLNDP NARGRLWLQA
IGGYGKLDGE HGSSGLEQRT KGSVLGADWA LNPQWRLGVL GGYSKTDLDA TGVDGNVESW
HAGVYAQHQN GPLALRLGAA YSGHQGESKR TIAFNGFSDR PKGDYDADSQ QAFAELGYAM
GTGRLSAEPF ASLGYQRYHR ERYQEKGGAA ALQVDSQTQD NFSSTFGLRL AHLGSLDNGM
SFTPRMAAGW KHTYGDVSSS TRQAFVVGGT AFSVDGSSLD RDSLVLEAGL DLGISARHTL
GLGYSGEIGS NSRNHGLIGQ WQMSF