| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5487 |
|---|
| Symbol | hemC |
|---|
| ID | 3713811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 6154648 |
|---|
| End bp | 6155589 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_351215 |
|---|
| Protein GI | 77461708 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTC GCGAAATCCG CATCGCCACC CGCAAAAGTG CTCTGGCCCT CTGGCAGGCC
GAATACGTCA AAGCCCGTCT GGAAGCAGCC CACCCGGGCC TGCTGGTGAC GCTGGTGCCC
ATGGTCAGTC GCGGCGACAA GCTGCTTGAT TCGCCCCTGT CGAAAATCGG TGGCAAGGGC
CTGTTCGTCA AGGAACTGGA AACCGCGCTG CTGGAAAACG AAGCCGACAT TGCCGTGCAC
TCGATGAAAG ACGTGCCGAT GGATTTTCCC GAAGGCCTTG GTCTGTTTTG CATCTGCGAG
CGCGAAGATC CGCGTGACGC GTTTGTCTCC AATACGTATT CCAGCCTCGA TGCGTTGCCA
GCCGGCAGCA TCGTCGGCAC GTCCAGCCTG CGCCGTCAGG CGCAGTTGCT GACGCGCCGT
CCTGATCTCG AGATCCGTTT CCTGCGCGGC AACGTCAACA CCCGTCTGGC CAAGCTCGAC
GCCGGCGAGT ACGACGCGAT CATCCTCGCG GCAGCGGGCC TGATCCGCCT CGGTTTCGAA
GATCGCATCA CCTCGGCCAT CAGCGTCGAC GACAGTCTGC CGGCCGGTGG CCAGGGCGCC
GTCGGTATCG AATGCCGCAG CGCCGACACT GAAATCCATG CCTTGCTTGC GCCCCTGCAT
CATGCCGACA CCGCTGACCG TGTCACGGCC GAGCGTGCCC TCAACAAACA CCTGAATGGC
GGCTGCCAAG TGCCGATCGC CTGCTACGCC GTGCTCGAAG GCGATCAGTT GTGGCTGCGC
GGGCTGGTGG GCGAGCCGAG CGGCGGCAAG CTGCTCAACG CACAAGCCCG TGCACCGCGT
GCGGCAGCCG AGACGCTGGG CGTGCAGGTG GCCGAAGACC TGCTCAGCCA GGGCGCCGAC
GATATTCTCA AGGCAGTCTA CGGCGAGGCA GGTCACGAGT GA
|
|---|
| Protein sequence | MSSREIRIAT RKSALALWQA EYVKARLEAA HPGLLVTLVP MVSRGDKLLD SPLSKIGGKG
LFVKELETAL LENEADIAVH SMKDVPMDFP EGLGLFCICE REDPRDAFVS NTYSSLDALP
AGSIVGTSSL RRQAQLLTRR PDLEIRFLRG NVNTRLAKLD AGEYDAIILA AAGLIRLGFE
DRITSAISVD DSLPAGGQGA VGIECRSADT EIHALLAPLH HADTADRVTA ERALNKHLNG
GCQVPIACYA VLEGDQLWLR GLVGEPSGGK LLNAQARAPR AAAETLGVQV AEDLLSQGAD
DILKAVYGEA GHE
|
|---|
| |