| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5223 |
|---|
| Symbol | |
|---|
| ID | 3716468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5878235 |
|---|
| End bp | 5880295 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_350951 |
|---|
| Protein GI | 77461444 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.493589 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.033231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTCG AAGCAATGTT TCAGCCAATT CAAATTGGCA AACTGACCAT CCGCAACCGC
GTGCTCAGCA CCGCGCACGC CGAGGTCTAC GCGACCGACG GCGGCATGAC CACCGAGCGG
TACGTCAAGT ATTACGAAGA GAAAGCCAAG GGCGGCATCG GCCTGGCGAT CTGTGGCGGT
TCGTCCGTGG TGGCGATCGA CAGCCCGCAG CAATGGTGGA GTTCGGTGAA CCTGTCCACC
GACCGGATCA TCCCGCACTT CCAGAATCTC GCCGACGCCA TGCACAAGCA CGGCGCCAAG
ATCATGATCC AGATTACCCA CATGGGCCGT CGCTCCCGTT GGGACGGTTT CCACTGGCCG
ACCCTGATGT CGCCGTCGGG TATCCGCGAA CCGGTGCACC GCGCCACCTG CAAGACCATC
GAGCCGGAAG AAATCTGGCG GGTGATCGGT AACTACGCGC AAGCCGCGCG CCGCGCCAAG
GCCGGTGGCC TGGACGGCGT CGAACTGTCG GCCGTGCACC AGCACATGAT CGACCAGTTC
TGGAGCCCGC GCGTCAACAA GCGGACCGAC GAATGGGGCG GCACTTTCGA GGGCCGCATG
AAGTTCGGTC TGGAAGTCCT GAAAGCCGTA CGCGCCGAGG TAGGTGACGA CTTCTGCGTC
GGCATGCGCA TCTGCGGTGA CGAGTTCCAC CCGGACGGTC TGTCCCACGA AGACATGAAG
CAGATCGCCA AATATTACGA CGACACCGGC ATGCTCGATT TCATCGGCGT CGTCGGCTCG
GGTTGCGACA CCCACAACAC CCTGGCCAAC GTGATTCCGA ACATGAGTTA TCCGCCGGAG
CCGTTCCTGC ACCTGGCGGC CGGAATCAAG GAAGTGGTCA AGGTTCCGGT GCTGCACGCG
CAGAACATCA AGGACCCGAA CCAGGCCACG CGGATTCTCG AGGGCGGTTA CGTCGACATG
GTCGGCATGA CCCGCGCCCA CATCGCCGAC CCGCACCTGA TCGCCAAGAT CAAGATGGGC
CAGATCGACC AGATCAAACA GTGCGTCGGC GCCAACTACT GCATCGACCG TCAGTATCAA
GGTCTGGACG TGCTGTGCAT CCAGAACGCC GCGACCTCCC GTGAATACAT GGGCGTGCCG
CACATCATCG AGAAATCCAC CGGGCCGAAA CGCAAGGTGG TGATCGTCGG TGCCGGCCCG
GCGGGGATGG AAGCTGCCCG TGTGGCGGCC GAACGTGGCC ACGACGTGAC CCTGTTCGAG
AAGAAGGAAT TCATCGGCGG CCAGATCACT ACGGCCTCGA AAGCGCCGCA GCGTGACCAG
ATCGCCGGCA TCACCCGCTG GTTCCAGCTG GAGCTGGCAC GGCTGAAAGT CGACCTGCGC
CTGGGCACTG CCGCAGACGC CGACACCATC ATGGACCTGC GCCCGGACAT CGTGGTGCTG
GCGGTTGGCG GGCATCCATA CCTTGAACAG AACGAACACT GGGGCGCCGC CGAAGGGCTG
GTGGTCAGCA GCTGGGACGT GCTCGACGGC AAGGTCGCGC CGGGCAAGAA CGTGCTGGTC
TACGACACCA TCTGCGAATT CACCGGGATG TCGGTGGCCG ACTTCCTTGC CGACAAGGGC
AGCCAGGTCG AGATCGTCAC CGACGACATC AAACCGGGCG TGGCCATCGG TGGTACGTCG
TTCCCGACCT ACTACCGCAG CATGTACCCG AAAGAAGTGA TCATGACCGG CGACATGATG
CTGGAGAAGG TTTACCGCGA AGGCGACAAA CTCGTCGCCG TGCTGGAGAA CGAATACACC
GGCGCCAAAG AGGAGCGGGT GGTGGATCAG GTGGTCGTCG AGAACGGCGT GCGCCCGGAC
GAAGAAATCT ACTACGCCCT CAAGGACGGC TCGCGTAACA AGGGCCAGAT CGATGTCGAG
GCACTGTTTG CGATCCAGCC ACAACCTTCG TTGAGCAGCA CCGGCGACGG TTACTTGCTG
TTCCGCATCG GTGACTGCGT GGCGCAGCGT AATACTCACG CTGCGATCTA TGACGCCCTG
CGGTTGTGCA AAGACTTCTA A
|
|---|
| Protein sequence | MAFEAMFQPI QIGKLTIRNR VLSTAHAEVY ATDGGMTTER YVKYYEEKAK GGIGLAICGG
SSVVAIDSPQ QWWSSVNLST DRIIPHFQNL ADAMHKHGAK IMIQITHMGR RSRWDGFHWP
TLMSPSGIRE PVHRATCKTI EPEEIWRVIG NYAQAARRAK AGGLDGVELS AVHQHMIDQF
WSPRVNKRTD EWGGTFEGRM KFGLEVLKAV RAEVGDDFCV GMRICGDEFH PDGLSHEDMK
QIAKYYDDTG MLDFIGVVGS GCDTHNTLAN VIPNMSYPPE PFLHLAAGIK EVVKVPVLHA
QNIKDPNQAT RILEGGYVDM VGMTRAHIAD PHLIAKIKMG QIDQIKQCVG ANYCIDRQYQ
GLDVLCIQNA ATSREYMGVP HIIEKSTGPK RKVVIVGAGP AGMEAARVAA ERGHDVTLFE
KKEFIGGQIT TASKAPQRDQ IAGITRWFQL ELARLKVDLR LGTAADADTI MDLRPDIVVL
AVGGHPYLEQ NEHWGAAEGL VVSSWDVLDG KVAPGKNVLV YDTICEFTGM SVADFLADKG
SQVEIVTDDI KPGVAIGGTS FPTYYRSMYP KEVIMTGDMM LEKVYREGDK LVAVLENEYT
GAKEERVVDQ VVVENGVRPD EEIYYALKDG SRNKGQIDVE ALFAIQPQPS LSSTGDGYLL
FRIGDCVAQR NTHAAIYDAL RLCKDF
|
|---|
| |