| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5149 |
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| Symbol | |
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| ID | 3717280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 5785829 |
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| End bp | 5787676 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_350877 |
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| Protein GI | 77461370 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATTATTGAGT TGATCAAACT GGGTCGTGAG
CAGAAGTATC TGACTTACGC CGAGGTCAAC GACCACCTGC CCGAGGATAT TTCAGATCCG
GAGCAGGTGG AAGACATCAT CCGCATGATT AACGACATGG GGATCCCCGT ACACGAGAGT
GCTCCGGATG CGGACGCCCT TATGCTGGCC GACGCCGATA CCGACGAGGC CGCTGCGGAA
GAAGCAGCCG CTGCGTTGGC GGCGGTGGAG ACCGATATCG GTCGCACCAC TGACCCGGTG
CGCATGTACA TGCGTGAAAT GGGTACGGTC GAGCTTCTGA CTCGTGAAGG CGAAATCGAA
ATCGCCAAGC GTATCGAAGA AGGCATCCGT GAAGTGATGA GCGCCATCGC GCACTTCCCT
GGCACGGTTG ACCATATTCT CTCCGAGTAC ACTCGCGTCA CCACCGAAGG TGGTCGCCTG
TCCGACGTTC TGAGCGGTTA CATCGACCCG GACGACGGCA TTACGCCGCC TGCCGCCGAA
GTACCGCCAC CGATCGACGC GAAAGCCGCG AAAGCGGATG ACGACTCCGA GGACGATGAC
GCCGAAGCTT CCGATGACGA AGAAGAAGCC GAAAGCGGTC CGGATCCGGT CATTGCCGCA
CAGCGCTTCG GTGCTGTCGC CGACCAGATG GAAATCACCC GCAAGGCCCT GAAAAAGCAC
GGTCGTCACA ACAAGGCGGC AATTGCCGAA CTGTTGGCCC TGGCCGAGCT GTTCATGCCG
ATCAAGCTGG TGCCGAAGCA GTTCGAAGCC CTGGTCGAGC GTGTTCGCAG CGCCCTGGAT
CGCCTGCGTC AGCAAGAGCG CGCGATCATG CAACTGTGCG TACGTGATGC ACGTATGCCT
CGTGCCGACT TCCTGCGCCA GTTCCCGGGC AACGAAGTCG ACGAAAGCTG GTCCGACGCC
CTGGCCAAAG GCAAGAGCAA GTACGCCGAA GCCATCGCCC GCGTGCAACC GGACATCATC
CGTTGCCAGC AAAAGCTGAC CGCGCTGGAA ACCGAGACCG GTTTGACCAT CGCCGAGATC
AAGGACATCA ACCGTCGCAT GTCGATCGGT GAGGCGAAAG CCCGCCGCGC GAAGAAAGAG
ATGGTTGAAG CGAACTTGCG TCTGGTGATC TCCATCGCCA AGAAGTACAC CAACCGTGGC
CTGCAATTCC TCGACCTGAT CCAGGAAGGC AACATCGGTC TGATGAAAGC GGTGGACAAG
TTCGAATACC GTCGTGGTTA CAAGTTCTCG ACTTACGCCA CCTGGTGGAT CCGTCAGGCG
ATCACTCGCT CGATCGCCGA CCAGGCCCGC ACCATCCGTA TTCCGGTGCA CATGATCGAG
ACGATCAACA AGCTCAACCG TATTTCCCGG CAGATGCTGC AGGAAATGGG TCGCGAACCG
ACCCCGGAAG AGCTGGGTGA ACGCATGGAA ATGCCTGAGG ACAAGATCCG CAAGGTATTG
AAGATCGCCA AAGAGCCGAT CTCCATGGAA ACCCCGATCG GTGATGACGA AGACTCTCAT
CTGGGTGACT TCATCGAAGA CTCGACCATG CAGTCGCCAA TCGATGTCGC CACTGTCGAG
AGCCTGAAAG AAGCGACCCG CGAAGTGCTG TCCGGCCTTA CTGCCCGTGA AGCCAAGGTA
CTGCGCATGC GTTTCGGTAT CGACATGAAC ACCGACCATA CGCTTGAAGA AGTCGGCAAA
CAGTTTGACG TGACCCGCGA GCGGATCCGT CAGATCGAAG CCAAGGCGCT GCGCAAGCTG
CGCCACCCGA CGCGAAGCGA GCATCTGCGC TCCTTCCTCG ACGAGTGA
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| Protein sequence | MSGKAQQQSR IIELIKLGRE QKYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGIPVHES
APDADALMLA DADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMSAIAHFP GTVDHILSEY TRVTTEGGRL SDVLSGYIDP DDGITPPAAE
VPPPIDAKAA KADDDSEDDD AEASDDEEEA ESGPDPVIAA QRFGAVADQM EITRKALKKH
GRHNKAAIAE LLALAELFMP IKLVPKQFEA LVERVRSALD RLRQQERAIM QLCVRDARMP
RADFLRQFPG NEVDESWSDA LAKGKSKYAE AIARVQPDII RCQQKLTALE TETGLTIAEI
KDINRRMSIG EAKARRAKKE MVEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLNRISR QMLQEMGREP
TPEELGERME MPEDKIRKVL KIAKEPISME TPIGDDEDSH LGDFIEDSTM QSPIDVATVE
SLKEATREVL SGLTAREAKV LRMRFGIDMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL
RHPTRSEHLR SFLDE
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