Gene Pfl01_5008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_5008 
Symbol 
ID3714674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp5644984 
End bp5646867 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content60% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_350736 
Protein GI77461229 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.877838 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTCT CGCGCCTCGC CCTGCCCCTC CTGCTGCTGC CCTCCGCCAA CGCCCTCGCT 
GACAATTTCG AACGCGACCA GGCCCTGAAG CTGCCGGACG TGCTGATCAG CGCCAACCGT
CAGGTCGAAG CGCGCAACGA CAGCAGCGCC GCCAACACCG TGTTCACCCG CGAAGACATC
GAGCGTCTGC AACCGCGCAG CGTCACCGAT CTGCTGCAAC GGGTACCGGG CGTGCAAGTG
GCGCAAACCG GCGGACGTGG CAGCCTCCCG GGGATCTACA TTCGCGGCAC GCAATCGGCG
CAGAGCCTGG TGCTGGTCGA CGGCCAGCGC ATCGGCAACT CCACTTCCGG CGACAGCAAC
CTGCAACACC TCAACATCGA GCAGATCGAG CGCGTGGAAG TGCTGCGCGG TTCACGTTCG
GTGATTTACG GTAGCGATGC AATTGGCGGG GTGATTCAGA TCTTCACCCG GCGCGGCGGC
GAACAAGGCT TGCAGCCGCG GATGCATGTC GGATTCGGCA GCAACCAGAC CTGGGAACGC
AGTATTGGCC TCTCCGGCGG AGACGAGAAA ACCCGCTTCA ACCTCGGCGC CAGCCTCGAT
GAAACCGCCG GCCTCGACCG CACCCATGAG TCCTACCCCA GCGACAGCGA TCACGATGCC
TACCGCAACA AATCCATCAG CCTGAGCCTC AGCCATGCGC TGACCGATGA CATCGAAGTC
GGCGCCAATC TGCTGGATAA CAGGGGCAAA AGCGAGTTCG ACAGTCCATG GGGACGTTAC
GTTGAAGCAA CCGACCGATC CTATGAAGAG CAACCTTACA GCGATTTCAC CGTCAGCAGT
TTCAGCAGCT ACATCGATGC GCGGATCAAC GAGCGCTGGA GGTCGCGCCT GGAACTCGGC
CACAGCGAAA ATCGTGAAAA AACCTTCGAC AAGCTCAGCG ATGAACGCTC GGTGTTCAAC
ACCTACCGTG ATTCGGTAAC CTGGCAGAAC GACCTGACCC TCGATGCGCG CAACAGCCTG
ATCCTTGGTG GCAACTGGTA CGAAGACCGG ATCAACAGCA GCACCGCGTT CGACGAAGAC
AGTCGCTGGA ACCGCGCCGC ATTTATCCAG CATCGTTATC AGGCCGACAG CTTCTCCACC
GAACTGGGCC TGCGTCGCGA TGACAACCAG CAGTTCGGCG GTCAGAACAG CTGGAGCGGC
ACGCTGACGT TGCCGGTCAA TCCCGACAAC GATCTGCTCT TGAGCTACAG CGAAGGCTTC
CGTGCCCCTA CTTTCAACGA CCTGTACTAC CCCAAGTACA GCAATCCGGA TCTGAAACCG
GAAACCTCCA AAAGCTATGA GTTGCAGTGG CGCAGCCAGT TGACTGACAG CAGCCGTCTA
GAGGCGTCGA TTTATCGTAC AGATCTGAAG GACGCCATTA TCGCCGCTGA CGGTAACCCT
CCAGAGAACG TCGCCTCGGC GCGAATCAAC GGCTTCGAAG CAACGCTAAA ACAGGAGCTG
TTCGGCTGGC AGAGCAACCT CGGCGTGGCG ATCATCGATC CCCGCGACCG CGACACCGGC
CACACCTTGG CACGTCGTGC CCGTCGCACC TTGAGCTGGG ATCTGGATCG ACAGTTCGAT
CGCCTTGGCC TCGGCGCCAG TTGGCAGGCC GTGAGCAGCA GCTATGACGA CCTGAACAAT
CAGCAGCCGC TTGGCGGTTA TGCACTGCTC GGACTGCGCA GCAGCTGGGC GTTGAACCGC
GAGATCAAGC TGGATTTCAA GATCGACAAC CTGCTGGACA AGGGTTACAG CCGGGCGCTG
TACAGCCATG ACGGCAGTCA GTATGACTAT CGCGAGGAAG GTCGGGCGTT CATGTTCGGC
GTGACCTGGA CACCGCAGCT CTAA
 
Protein sequence
MNLSRLALPL LLLPSANALA DNFERDQALK LPDVLISANR QVEARNDSSA ANTVFTREDI 
ERLQPRSVTD LLQRVPGVQV AQTGGRGSLP GIYIRGTQSA QSLVLVDGQR IGNSTSGDSN
LQHLNIEQIE RVEVLRGSRS VIYGSDAIGG VIQIFTRRGG EQGLQPRMHV GFGSNQTWER
SIGLSGGDEK TRFNLGASLD ETAGLDRTHE SYPSDSDHDA YRNKSISLSL SHALTDDIEV
GANLLDNRGK SEFDSPWGRY VEATDRSYEE QPYSDFTVSS FSSYIDARIN ERWRSRLELG
HSENREKTFD KLSDERSVFN TYRDSVTWQN DLTLDARNSL ILGGNWYEDR INSSTAFDED
SRWNRAAFIQ HRYQADSFST ELGLRRDDNQ QFGGQNSWSG TLTLPVNPDN DLLLSYSEGF
RAPTFNDLYY PKYSNPDLKP ETSKSYELQW RSQLTDSSRL EASIYRTDLK DAIIAADGNP
PENVASARIN GFEATLKQEL FGWQSNLGVA IIDPRDRDTG HTLARRARRT LSWDLDRQFD
RLGLGASWQA VSSSYDDLNN QQPLGGYALL GLRSSWALNR EIKLDFKIDN LLDKGYSRAL
YSHDGSQYDY REEGRAFMFG VTWTPQL