Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5008 |
Symbol | |
ID | 3714674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 5644984 |
End bp | 5646867 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | |
Product | TonB-dependent receptor |
Protein accession | YP_350736 |
Protein GI | 77461229 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.877838 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTCT CGCGCCTCGC CCTGCCCCTC CTGCTGCTGC CCTCCGCCAA CGCCCTCGCT GACAATTTCG AACGCGACCA GGCCCTGAAG CTGCCGGACG TGCTGATCAG CGCCAACCGT CAGGTCGAAG CGCGCAACGA CAGCAGCGCC GCCAACACCG TGTTCACCCG CGAAGACATC GAGCGTCTGC AACCGCGCAG CGTCACCGAT CTGCTGCAAC GGGTACCGGG CGTGCAAGTG GCGCAAACCG GCGGACGTGG CAGCCTCCCG GGGATCTACA TTCGCGGCAC GCAATCGGCG CAGAGCCTGG TGCTGGTCGA CGGCCAGCGC ATCGGCAACT CCACTTCCGG CGACAGCAAC CTGCAACACC TCAACATCGA GCAGATCGAG CGCGTGGAAG TGCTGCGCGG TTCACGTTCG GTGATTTACG GTAGCGATGC AATTGGCGGG GTGATTCAGA TCTTCACCCG GCGCGGCGGC GAACAAGGCT TGCAGCCGCG GATGCATGTC GGATTCGGCA GCAACCAGAC CTGGGAACGC AGTATTGGCC TCTCCGGCGG AGACGAGAAA ACCCGCTTCA ACCTCGGCGC CAGCCTCGAT GAAACCGCCG GCCTCGACCG CACCCATGAG TCCTACCCCA GCGACAGCGA TCACGATGCC TACCGCAACA AATCCATCAG CCTGAGCCTC AGCCATGCGC TGACCGATGA CATCGAAGTC GGCGCCAATC TGCTGGATAA CAGGGGCAAA AGCGAGTTCG ACAGTCCATG GGGACGTTAC GTTGAAGCAA CCGACCGATC CTATGAAGAG CAACCTTACA GCGATTTCAC CGTCAGCAGT TTCAGCAGCT ACATCGATGC GCGGATCAAC GAGCGCTGGA GGTCGCGCCT GGAACTCGGC CACAGCGAAA ATCGTGAAAA AACCTTCGAC AAGCTCAGCG ATGAACGCTC GGTGTTCAAC ACCTACCGTG ATTCGGTAAC CTGGCAGAAC GACCTGACCC TCGATGCGCG CAACAGCCTG ATCCTTGGTG GCAACTGGTA CGAAGACCGG ATCAACAGCA GCACCGCGTT CGACGAAGAC AGTCGCTGGA ACCGCGCCGC ATTTATCCAG CATCGTTATC AGGCCGACAG CTTCTCCACC GAACTGGGCC TGCGTCGCGA TGACAACCAG CAGTTCGGCG GTCAGAACAG CTGGAGCGGC ACGCTGACGT TGCCGGTCAA TCCCGACAAC GATCTGCTCT TGAGCTACAG CGAAGGCTTC CGTGCCCCTA CTTTCAACGA CCTGTACTAC CCCAAGTACA GCAATCCGGA TCTGAAACCG GAAACCTCCA AAAGCTATGA GTTGCAGTGG CGCAGCCAGT TGACTGACAG CAGCCGTCTA GAGGCGTCGA TTTATCGTAC AGATCTGAAG GACGCCATTA TCGCCGCTGA CGGTAACCCT CCAGAGAACG TCGCCTCGGC GCGAATCAAC GGCTTCGAAG CAACGCTAAA ACAGGAGCTG TTCGGCTGGC AGAGCAACCT CGGCGTGGCG ATCATCGATC CCCGCGACCG CGACACCGGC CACACCTTGG CACGTCGTGC CCGTCGCACC TTGAGCTGGG ATCTGGATCG ACAGTTCGAT CGCCTTGGCC TCGGCGCCAG TTGGCAGGCC GTGAGCAGCA GCTATGACGA CCTGAACAAT CAGCAGCCGC TTGGCGGTTA TGCACTGCTC GGACTGCGCA GCAGCTGGGC GTTGAACCGC GAGATCAAGC TGGATTTCAA GATCGACAAC CTGCTGGACA AGGGTTACAG CCGGGCGCTG TACAGCCATG ACGGCAGTCA GTATGACTAT CGCGAGGAAG GTCGGGCGTT CATGTTCGGC GTGACCTGGA CACCGCAGCT CTAA
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Protein sequence | MNLSRLALPL LLLPSANALA DNFERDQALK LPDVLISANR QVEARNDSSA ANTVFTREDI ERLQPRSVTD LLQRVPGVQV AQTGGRGSLP GIYIRGTQSA QSLVLVDGQR IGNSTSGDSN LQHLNIEQIE RVEVLRGSRS VIYGSDAIGG VIQIFTRRGG EQGLQPRMHV GFGSNQTWER SIGLSGGDEK TRFNLGASLD ETAGLDRTHE SYPSDSDHDA YRNKSISLSL SHALTDDIEV GANLLDNRGK SEFDSPWGRY VEATDRSYEE QPYSDFTVSS FSSYIDARIN ERWRSRLELG HSENREKTFD KLSDERSVFN TYRDSVTWQN DLTLDARNSL ILGGNWYEDR INSSTAFDED SRWNRAAFIQ HRYQADSFST ELGLRRDDNQ QFGGQNSWSG TLTLPVNPDN DLLLSYSEGF RAPTFNDLYY PKYSNPDLKP ETSKSYELQW RSQLTDSSRL EASIYRTDLK DAIIAADGNP PENVASARIN GFEATLKQEL FGWQSNLGVA IIDPRDRDTG HTLARRARRT LSWDLDRQFD RLGLGASWQA VSSSYDDLNN QQPLGGYALL GLRSSWALNR EIKLDFKIDN LLDKGYSRAL YSHDGSQYDY REEGRAFMFG VTWTPQL
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