| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4935 |
|---|
| Symbol | |
|---|
| ID | 3714057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5560498 |
|---|
| End bp | 5563017 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_350663 |
|---|
| Protein GI | 77461156 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.557516 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTT TGCCGATCGA CGAAGTTTTA CCCGCCCTGC GTGAAGCGTT GGCGACACGC
CACGAAGCCG TGCTCGAAGC ACCGCCCGGC GCCGGTAAAA CCACCCGCGT GCCCTTGGCC
CTGCTCAATG AAGCATGGCT GAACGGGCAG ACCATTCTCA TGCTCGAACC GCGTCGACTG
GCCGCGCGCG CAGCGGCGGA ACGGCTGGCC AGCGAGCTGG GCGAGAAGGT CGGTGAAACC
GTCGGTTATC GCATCCGCCT CGACAGCAAG GTTGGCCCCA ACACCCGCAT CGAAGTGGTC
ACCGAAGGCA TCCTCACCCG GCGTTTGCAG GACGACCCGG CACTGGAAGG CGTGGGTCTG
CTGATCTTCG ACGAATTTCA CGAACGCAGC CTCGACGCCG ATCTGGCGCT GGCCCTCAGT
CTGAACGGTC GCGAGCTGTT TCGAGCTGAA CAACCGCTGA AGATTCTGCT GATGTCCGCC
ACCCTTGAAG GCGAACGTCT GGCCGGTTTG CTCGACAACG CGCCAATCCT GCGCAGCGAG
GGCCGGATGT TCCCGGTGAC GATGCGCTGG GGCCGGCCGT TTCAGCCCGG CGAATACATC
GATCAACGTG TCACGCAAAC GGTGCTCGAA GCGCTGCACG ATGAAACCGG CAGCCTGCTG
GTGTTCCTGC CGGGGCAGGC GGAAATCCGG CGGGTTCATC AGCAACTGGC GGACGCCATT
GGTGAGCGCA GCGACGTGAT GCTCTGCCCG TTGCATGGCG AACTCGACCT GAATGCCCAG
CGTGCCGCCA TCGACCCGGC GCCGGCCGGC CAGCGCAAAG TGGTGCTGGC CACCAACATC
GCCGAGACCA GCCTGACCAT CAACGGCGTG CGCGTGGTGA TCGACGCCGG GCTGGCGCGG
GTGCCGCGTT TCGACCCCGG CAGCGGCATG ACCCGCCTCG ACACCCAACG CATCTCCAAA
GCCAGCGCTA CCCAGCGTGC CGGCCGGGCC GGGCGTCTGG AACCGGGCGT GTGTTATCGC
CTGTGGTCGC AGGATCAGCA TGAACAACTC GCGGCTTATG GCAGTGCGGA AATCCTTTCG
GCGGATCTCG CAGGGCTGGC GTTGCAACTC GGGCGCTGGG GCGTGGCGCC GAGTGATTTG
ATCTGGCTGG ATGTGCCGCC AGCGGCCGCT TATGCACAGG CTCAGGATCT GTTGCAGCGC
CTCGGTGCGC TGGACGGTGA AAGCCTGAAT CGCCACGGTC AGGCCATGGC TGAATTGCCG
GCGCACCCGC GCATCGCTCA TTTGCTGTTG CGCGGTCAGG CTCTGGGGCT GTCGAACATG
GCTTGTGATG TTGCCGCGTT GCTCGGCGAG CGCGACATTT TGCGCGGTGC GGGGGCGGAT
CTGCACAGTC GTCTGGTGCT GCTGTCCGGC GAAGAACGCG CGGCCCGCGG TGCTCAGGGC
GGCGTGCAGC GTGCCCGGCA ACTGGCGCGG CAGTATCACG GCTACCTGCG CGGTAAGGCC
AGCGAACCGG TCGCCGACCC GGATCATCCA CGCTGGCTCG GCGCGCTGCT GGCGCTGGCC
TACCCGGACC GCGTCGCCCA GCAGCGGCGG GCCGGTGGCG CCGAATATCG ACTGGCCAAC
GGCCGCGCCG CGCTGTTCGC CGAACCCGAC AGCCTGATGA AGGAACCGTG GATCGTCATC
GCCGACCTCG GCAGTCGCCA AGGTCAGCGT GAAGAGCGGA TTTATCTGGC GGCGGATTTC
GATCCGGCGC TGTTCGATTC GGTGCTGGCG GAACAGGTGC ACAACGTCGA TCAACTGGAC
TGGGACGAAC GCGAAGGCGT GCTGCGCGCC GAGCGTCAGC GCAAGGTCGG CGAACTGATC
CTCAGCCGCG AGCCGCTGAC CGGTCTCGAC GAAAACGCCC GCAGTCAGGC ACTGGTCAAT
CTGGTGCGGC GCAAGGGGCT GGAGCTGCTG CCGTGGACCC CGGAACTGCG CCAGTGGCAG
GCGCGAGTCG CGTTGCTGCG TCAGCTCGAC CTGGACGCCA AGGGCGACAG CCAATGGCCG
GATGTCAGCG ACGCAACGTT GCTGAAAACA CTCGAAGACT GGCTGATGCC TTACCTGGGC
AAAGTCTCGC GCCTCAGCCA TTTCGCCAAC CTCGACCTGT CGAGTATCGT GCGTAATCTG
CTGCCTTGGC CACTGCCGCA ACAGCTTGAT GAACAGGCGC CCCATCACCT GAGCGTGCCG
TCAGGCTCGT CGATTCGCCT CGACTACAGC GAGCAACCAC CGATTCTCGC CGTGCGTTTG
CAGGAGCTGT TCGGCCTCGC CGACACACCG CGCATCGCCG GCGGTCGGCA GGTGGTCAAG
CTGCACCTGC TGTCGCCCGC ACGGCGCCCG GTGCAGGTGA CGCAGGATCT GGCCAACTTC
TGGCGCAGCA CCTATGCCGA GGTGAAGAAG GATCTGAAGG GGCGCTATCC GAAGCATTAC
TGGCCGGATG ATCCGCTGGT GGCTGAAGCC ACCGCACGAG CCAAACCGCG CGGTACGTGA
|
|---|
| Protein sequence | MISLPIDEVL PALREALATR HEAVLEAPPG AGKTTRVPLA LLNEAWLNGQ TILMLEPRRL
AARAAAERLA SELGEKVGET VGYRIRLDSK VGPNTRIEVV TEGILTRRLQ DDPALEGVGL
LIFDEFHERS LDADLALALS LNGRELFRAE QPLKILLMSA TLEGERLAGL LDNAPILRSE
GRMFPVTMRW GRPFQPGEYI DQRVTQTVLE ALHDETGSLL VFLPGQAEIR RVHQQLADAI
GERSDVMLCP LHGELDLNAQ RAAIDPAPAG QRKVVLATNI AETSLTINGV RVVIDAGLAR
VPRFDPGSGM TRLDTQRISK ASATQRAGRA GRLEPGVCYR LWSQDQHEQL AAYGSAEILS
ADLAGLALQL GRWGVAPSDL IWLDVPPAAA YAQAQDLLQR LGALDGESLN RHGQAMAELP
AHPRIAHLLL RGQALGLSNM ACDVAALLGE RDILRGAGAD LHSRLVLLSG EERAARGAQG
GVQRARQLAR QYHGYLRGKA SEPVADPDHP RWLGALLALA YPDRVAQQRR AGGAEYRLAN
GRAALFAEPD SLMKEPWIVI ADLGSRQGQR EERIYLAADF DPALFDSVLA EQVHNVDQLD
WDEREGVLRA ERQRKVGELI LSREPLTGLD ENARSQALVN LVRRKGLELL PWTPELRQWQ
ARVALLRQLD LDAKGDSQWP DVSDATLLKT LEDWLMPYLG KVSRLSHFAN LDLSSIVRNL
LPWPLPQQLD EQAPHHLSVP SGSSIRLDYS EQPPILAVRL QELFGLADTP RIAGGRQVVK
LHLLSPARRP VQVTQDLANF WRSTYAEVKK DLKGRYPKHY WPDDPLVAEA TARAKPRGT
|
|---|
| |